PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050150.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 304aa    MW: 34190.1 Da    PI: 9.2652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-1197145355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  rEr RR+++++ f++L  l+P++      K +K+ ++ +Av++I++Lq
  Sopen01g050150.1  97 EVHRWRERERRKKMRTLFQTLHALVPNL----PAKADKSKVVYEAVNCIRKLQ 145
                       56899**********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-1292161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1393156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.15494144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-897145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-5100150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-4222282No hitNo description
SuperFamilySSF550212.09E-5224279No hitNo description
CDDcd048737.70E-5226268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSESGKNNHD HLCGDVRSYL DWNDHQVESR ETECIKLLNP TRSDTCQPLT VINEVVKVSA  60
DVAKKRSPPN RKKNGKGIAE QISGVDGVEA RKVSKHEVHR WRERERRKKM RTLFQTLHAL  120
VPNLPAKADK SKVVYEAVNC IRKLQNTFNK LESQKLERLE ENNIMLMGSQ KVGNRLEKYA  180
GDHGSTCNST AITQANHGSS PLIPTCFMIW SSPNVVLNVA GEDAHINVCC PKKPGLFTTI  240
CYVLEKYKID IVSVRISSDQ FRSMFMIQAH AKGGSGVAQF SEGFTVEDMY KQAANEIMLM  300
TTPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082546.20.0transcription factor bHLH95-like
TrEMBLK4AUZ91e-170K4AUZ9_SOLLC; Uncharacterized protein
STRINGSolyc01g107960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-31bHLH family protein