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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g050140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 841aa MW: 92786.4 Da PI: 10.3051 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.9e-10 | 97 | 145 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h+ Er RR+++++ fe+L l+P++ K +K+ i+ +Av+ I++Lq Sopen01g050140.1 97 EVHKWTERERRKKMRTLFETLHALVPNL----PAKADKSKIVYEAVNRIRKLQ 145 568889*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-11 | 91 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.75E-9 | 92 | 146 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-12 | 93 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.275 | 94 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-7 | 97 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-4 | 102 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 8.1E-5 | 217 | 265 | No hit | No description |
SuperFamily | SSF55021 | 1.04E-5 | 218 | 269 | No hit | No description |
PROSITE profile | PS51671 | 9.553 | 220 | 293 | IPR002912 | ACT domain |
CDD | cd04873 | 6.59E-6 | 221 | 281 | No hit | No description |
Pfam | PF14223 | 1.3E-32 | 367 | 505 | No hit | No description |
SuperFamily | SSF57756 | 6.28E-7 | 527 | 562 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 2.4E-5 | 541 | 561 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF00098 | 1.7E-4 | 545 | 561 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 0.0017 | 545 | 561 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.927 | 546 | 561 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MNEGGENNHD HLCDDIWSHL DWNDHQVESG ETEGNKLLDP TGSDTCQPLT VTNEVVEGSV 60 NVAKRRSSAN RKKNGKEIAE PNSGVDGAEV RRASKHEVHK WTERERRKKM RTLFETLHAL 120 VPNLPAKADK SKIVYEAVNR IRKLQNTFNK LKSQKLERLE ENNIMLMGSQ KVGNSWEKHA 180 GDQGSICNSK AITPANHGPT GFMTWSSPNV ILNVSGEDAH ISVCCPKKPG LFTTICYVLE 240 KHKIDIVSAQ ISSDQFRSMF MIQAHAKGRS SRRYRVGNLK QQPARRTAQG ANSRRPCAVR 300 RAVPLAAASR SLRSSRERPD QDGKFRIEKF DGTDFSWWKM QIEDLLVQKD LDVVLGDKQG 360 KLSDAEWAVL DRKAMSVIRL SLTKNVAFNI LKEKTAKGIL EALSNMYEKP SAANKIFLIR 420 ELVNTKMKEG SSVTEHINSL NSILARLLSV GIKFDDEVQA LLLLSSLPDS WSGTVTAVAS 480 SVGPNGFTFE KIRDLVLGED VRRRSSGESS GDMLNVVRGR GNNRGSGSRN RRRSQSKARD 540 GSGVTCWNCK EVGHFRNQCQ KDKQVNIAED SVNEDLFICC AESNVDSWVM DSGASFHATH 600 SSEALQNLVI GDFGKVRLAD DRALDVTGMG DMVLKTPVGF WTLKDVRVVP SLTKSLISVR 660 QLDEQGHHVK FGNGQWKVVR GNLVMARGTK RGSLYIVGLP SEGVTVPVQK KNKVRFTESR 720 GQKKVVFARK KPRATGQIQD ERARKGSGRP VRGVCGSGST GRASAKAPRR QWVKRTSIPA 780 VDTSPENILL SMESVCSQGV LGSGSSCLKW EPVGTEDESR AVSAVTDVLK LRGASTGLSV 840 D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A484NHL5 | 0.0 | A0A484NHL5_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-37 | bHLH family protein |