PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g049430.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 292aa    MW: 30834.4 Da    PI: 7.5338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g049430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004115137123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k+F++   L  H  +H
  Sopen01g049430.1 115 FKCSECPKVFTSYQALGGHKASH 137
                       89**********99999998887 PP
2zf-C2H213.70.00018176198123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k F++   L  H r+H
  Sopen01g049430.1 176 HVCSICQKAFPTGQALGGHKRRH 198
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-9114137No hitNo description
PfamPF139121.4E-12115139IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993115137IPR007087Zinc finger, C2H2
SMARTSM003550.013115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576674.98E-9171198No hitNo description
PROSITE profilePS501579.64176203IPR007087Zinc finger, C2H2
PfamPF139123.9E-11176200IPR007087Zinc finger, C2H2
SMARTSM003550.056176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSIEALKSPT AAELPPLEEI DDDSHNLDSW AKGKRSKRPR IENPPTRDQY LALCLLMLAN  60
DDGTGFGKGK GNGTGSIGVE QQEKKPDELK PVFIKEKTEQ LLKPVVVKEK TEQLFKCSEC  120
PKVFTSYQAL GGHKASHRKI NVPATGDDDS NPSTSTSTSG GGGVNISALN PSGRSHVCSI  180
CQKAFPTGQA LGGHKRRHYE GKLGGNNRYI GGGGEGGGVH SGSVVTTSDG GSGNGGGGGA  240
STPIARDFDL NMPASPGWQL DLTIDCGGRT QHPIEQEVES PMPAKKPRLF FD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069371.10.0zinc finger protein ZAT10
TrEMBLI3NN781e-180I3NN78_SOLLC; ZF2
STRINGSolyc01g107170.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-33salt tolerance zinc finger