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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g048420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 378aa MW: 41330.9 Da PI: 4.8571 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.2 | 8.4e-17 | 218 | 254 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp +Rrgp+g++tLCnaCGl+++ kg+ Sopen01g048420.1 218 CHHCGTNEseTPAMRRGPSGPRTLCNACGLMWANKGM 254 ********9************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.208 | 80 | 115 | IPR010399 | Tify domain |
SMART | SM00979 | 8.1E-10 | 80 | 115 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.4E-12 | 83 | 114 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.838 | 149 | 191 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.4E-15 | 149 | 190 | IPR010402 | CCT domain |
SMART | SM00401 | 2.4E-9 | 212 | 263 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-12 | 213 | 263 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-15 | 216 | 258 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 8.59 | 216 | 260 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.16E-16 | 217 | 261 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 218 | 245 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.9E-14 | 218 | 253 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEAADNSRKM VGGQYEVVAF QQEYVNVPIR VDRYGGGGFE AHDISVGGGY EEAMSSGEEL 60 QVCSMPLVAG PVDSGRVMAV SSRTSELTIS FEGQVYVFPA VTPEKVQAVM LLLGGCEVPS 120 YVPNSNSVAL QSTKSVENDV PTRQNISPRM ASLIRFREKR KDRCFEKTIR YACRKEVAQR 180 MHRKNGQFAS LKEGGKSSAD NIDSGDSAAH SEPTLRRCHH CGTNESETPA MRRGPSGPRT 240 LCNACGLMWA NKGMFRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK QHQEGSSGET 300 KLTEENPSVT TAELDMQEAA ENFADSSPFR IRSSSVNIDD EDNLDELANA SGTEFEIPAD 360 FDEQIGIDSH MSVHWPVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-177 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015070009.1 | 0.0 | GATA transcription factor 19-like isoform X2 | ||||
Swissprot | Q8H1G0 | 3e-59 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A3Q7ESU5 | 0.0 | A0A3Q7ESU5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106040.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 7e-62 | ZIM-like 1 |