PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen01g047160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 274aa MW: 29092.4 Da PI: 6.0553 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.2 | 1.7e-13 | 218 | 270 | 4 | 56 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+eN +L e ee +ke Sopen01g047160.1 218 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLLREEEEKNKER 270 589**************************************998877766664 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.6E-6 | 215 | 273 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.116 | 217 | 269 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.5E-12 | 218 | 270 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.84E-22 | 219 | 259 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-9 | 219 | 269 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-12 | 220 | 272 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 222 | 237 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 274 aa Download sequence Send to blast |
MASKVMPSAS TTPNSDRSLH PQNPSSSLNH SHPSRNFDSM NMDEILKNIY SDSDPFACSV 60 SATAAVHTPS ATAAGGGGGV GDVGPTKTVD EVWREIVAGG GGGSREPEMT LEDFLTKAGA 120 VTEEDVRVPV IAPPPPPPPP PATGAPSARG FVVDNMMGTG NCQFPVAMQN GPGGYGMEPQ 180 PHMGFGNGVV AITGSGSGSG RGKRRSTVEE LPADRATQQK QRRMIKNRES AARSRERKQA 240 YTVELESLVT QLEEENARLL REEEEKNKER LKQV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064397.1 | 0.0 | bZIP transcription factor 12-like | ||||
TrEMBL | A0A3Q7EQU8 | 1e-157 | A0A3Q7EQU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g104650.2.1 | 1e-158 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-20 | bZIP family protein |