PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g046280.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 379aa MW: 43105.6 Da PI: 8.7061

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g046280.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.5e-08	245	289	17	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l + Sopen01g046280.1 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSM 289 89**********************************999876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.2E-4	234	293	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.60E-15	236	284	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-5	245	288	No hit	No description
SuperFamily	SSF57959	6.19E-6	245	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MENSKGPCTM RNMMYNGKSS LLPPKSPFPS MAPSYIDYVP SSAFNQKGIQ KPREGNSHHQ 60 RTSSESCIIE EQPSWLDDLL NEPETPVRRG SHRRSSSDSF AYFDSVNAAN LDYTAQVDNK 120 FRNMPPIPSW GSQDFDYYKD ARQAASFVDQ NSSIRRKNRE KDVSSTTVSH LRSLSSPGED 180 LHIQRSGSPC LLQDGERPRS AGSDKQDVAE SGPPYPKGSA EKKDSSQSKS SSSETDTKRA 240 KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILSME NKALMQRLEN 300 LAQEQLIKYL EHEVLERERG RLRALYQQQH QQPQPQPQQQ KPSYSHRRST SRDLDQQFAN 360 LTLKQKEAER DAVSGQLHI

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MENSKGPCTM RNMMYNGKSS LLPPKSPFPS MAPSYIDYVP SSAFNQKGIQ KPREGNSHHQ  60
RTSSESCIIE EQPSWLDDLL NEPETPVRRG SHRRSSSDSF AYFDSVNAAN LDYTAQVDNK  120
FRNMPPIPSW GSQDFDYYKD ARQAASFVDQ NSSIRRKNRE KDVSSTTVSH LRSLSSPGED  180
LHIQRSGSPC LLQDGERPRS AGSDKQDVAE SGPPYPKGSA EKKDSSQSKS SSSETDTKRA  240
KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILSME NKALMQRLEN  300
LAQEQLIKYL EHEVLERERG RLRALYQQQH QQPQPQPQQQ KPSYSHRRST SRDLDQQFAN  360
LTLKQKEAER DAVSGQLHI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013319	0.0	BT013319.1 Lycopersicon esculentum clone 135006R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015089133.1	0.0	uncharacterized protein At4g06598-like isoform X1
Swissprot	Q8W3M7	1e-63	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A3Q7ERL4	0.0	A0A3Q7ERL4_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400064169	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2765	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	4e-84	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]