![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen01g046250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 377aa MW: 42769.3 Da PI: 9.1823 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.7 | 1e-07 | 245 | 282 | 17 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 A+rsR RK+++i+eLe+ v++L+ae ++ ele +++ Sopen01g046250.1 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFINQ 282 89***********************9999999987766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0016 | 234 | 293 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.19E-14 | 236 | 284 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-5 | 245 | 287 | No hit | No description |
SuperFamily | SSF57959 | 1.69E-5 | 245 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MANSKGPCTM RNMMYNGKSS LLPPKSPFPS MAPSYVDYVP SSAFNQKGIQ KPREGNSHHQ 60 RTSSESCIIE EQPSWLDDLL NEPETPVRRG SHRRSSSDSF AYFDSVNAAN LDYTAQVDNK 120 FRNMPPIPSW GSQDFDYYKD ARQAASFVDQ NSSIRRKNRE KDVSSTTVSH LRSLSSPGED 180 LRIQRSGSPC LLQEGERPRS AGSDKQDVAE SGPPYPKGSA EKKDSSQSKS SSSETDTKRA 240 KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFI NQQNLILSME NKALKQRLEN 300 LAQEQLIKYL EHEVLERERG RLRALYQQQH QQPQPQQQKP SHSHRRSTSR DLDQQFANLT 360 LKQKEAELDA VSGQLHI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013319 | 0.0 | BT013319.1 Lycopersicon esculentum clone 135006R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089153.1 | 0.0 | uncharacterized protein At4g06598-like isoform X1 | ||||
Swissprot | Q8W3M7 | 6e-64 | Y4598_ARATH; Uncharacterized protein At4g06598 | ||||
TrEMBL | A0A3Q7ERL4 | 0.0 | A0A3Q7ERL4_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064169 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2765 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58110.2 | 4e-81 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|