PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g045900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 313aa    MW: 36113 Da    PI: 7.4493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g045900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.71.3e-121152344
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      i+ +  r+ tf kR++g+lKK +E  +LC+++ ++i++++++
  Sopen01g045900.1 11 ISKEKSRNATFKKRKEGLLKKLYEFTTLCNVNGLMIMYGPKQ 52
                      7888999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-15152IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-11161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.414151IPR002100Transcription factor, MADS-box
CDDcd002663.82E-17250No hitNo description
PRINTSPR004042.9E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRAKLKMEL ISKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGLMIMYGP KQGNGSECRA  60
EIWTNSSGTS SSTNSKSLQE QEEIDNLIDE YKKENSLQSG SSKTFGLSDY FVDRNKRVEE  120
EYIKLRKMNM EKKYPCWLEF MDQLSEFKLR DFLTLLDDKV ENVKNRIHLL KGNFSGLMGG  180
EMIDLGGNQW SHYNDNVMVQ GGGMEYGDYN QLQAPIYHQE MRMLMMNEND WQYNNGASSS  240
SSAGNGSNNM MCALMKYETM MPSNNNHLAY SPYVAPTILQ PTPCLMMPPQ MQQHSWREND  300
RDDKAKFSPY MSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769741.10.0floral homeotic protein AGAMOUS-like
TrEMBLA0A3Q7EQ560.0A0A3Q7EQ56_SOLLC; Uncharacterized protein
STRINGSolyc01g103550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-17M-type_MADS family protein