PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g045160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 400aa    MW: 45493.2 Da    PI: 6.7142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g045160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.5e-50391642128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +
  Sopen01g045160.1  39 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRT 130
                       79***************************.89***************8778899*************************************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ +glkktLvfy+g+apkg +++W+m+eyrl
  Sopen01g045160.1 131 ENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 164
                       ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.00238185IPR003441NAC domain
SuperFamilySSF1019411.03E-5538184IPR003441NAC domain
PfamPF023654.5E-2540164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSQSQQHQQQ DDDDNNNINN TIKGGDNDDD DDHEHDMVMP GFRFHPTEEE LVEFYLRRKV  60
EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK  120
ATGADRMIRT ENSRSIGLKK TLVFYSGKAP KGIRSSWIMN EYRLPHHETE RLQKAEISLC  180
RVYKRAGVED HPSLPRSLLT TRASSSSSSR GTTPIKKQQV AQQDSSLISP LYLAQQQIDE  240
KLSTETSASS TSTDHHHQHQ HQHHVATSLG LNSLSNSYTN IALDPIGSAV NITTSTLTPF  300
TSLVATTNNT TDDLHRLINL DQVVAFHNNQ HHFHPPPGVV PQQYPPPLLL QQPQSLLHQG  360
SLPSSAAAAF SDRLWEWNSI NQTDGSCKDD HYDQGNNPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-564018519165NO APICAL MERISTEM PROTEIN
1ut4_B6e-564018519165NO APICAL MERISTEM PROTEIN
1ut7_A6e-564018519165NO APICAL MERISTEM PROTEIN
1ut7_B6e-564018519165NO APICAL MERISTEM PROTEIN
4dul_A6e-564018519165NAC domain-containing protein 19
4dul_B6e-564018519165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063573.10.0NAC domain-containing protein 35 isoform X2
SwissprotQ9ZVP81e-114NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A3Q7F9J50.0A0A3Q7F9J5_SOLLC; Uncharacterized protein
STRINGSolyc01g102740.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]