PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g042900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 423aa MW: 47263.6 Da PI: 8.7076 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Sopen01g042900.1 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Sopen01g042900.1 146 WKCEKCSKKYAVQSDWKAHSKTC 168 58*****************9998 PP | |||||||
3 | zf-C2H2 | 10.7 | 0.0017 | 176 | 194 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++++H + Sopen01g042900.1 176 DCGTIFSRRDSFVTHRAFC 194 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-6 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.6E-5 | 69 | 92 | No hit | No description |
Pfam | PF12171 | 1.9E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.7E-5 | 134 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.6E-5 | 141 | 166 | No hit | No description |
SMART | SM00355 | 140 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSNSNLSSGN SSEEADETPY VLSSTSDGST AHQEHSQTHN KKRRKLPGNP DPSAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTSNEIKKRV YICPESSCIH 120 HNPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT KEYKCDCGTI 180 FSRRDSFVTH RAFCDALAEE NNKVNQVLAS TTQPLATGPE LISTTQMLNL PQIRNSNMKI 240 PSMPLNMAGS MFSSSSGFNQ LGTNSSNMSS ATALLQQAAQ MGATVSNNMN STLFNGVQVP 300 FQSNHNHDQN ETQIGSILQG FGGSMLQNNG DDHLKSSRVL QNEQGWFNNN NNSNTGLFNE 360 KQRILNKEAG HSNEESLTLD FLGIGGMRHR NLHEMHQQQQ EMSFEQQQVN HQSIQGVNSI 420 WDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-35 | 142 | 207 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 6e-35 | 142 | 207 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 44 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065552.1 | 0.0 | protein indeterminate-domain 12-like | ||||
TrEMBL | A0A3Q7EN51 | 0.0 | A0A3Q7EN51_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g099340.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 7e-98 | C2H2 family protein |