PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g040200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 342aa    MW: 37640.5 Da    PI: 9.6828
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g040200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-1641125186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Sopen01g040200.1  41 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsarvNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 125
                       5***********************************9987778888999999******************99984.....57****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1939125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDNEAANHHQ NHEISNKDEF SPRIKPLQNY HVPSDRLKRD EWSEGAVSCL LEAYEAKWIL  60
RNRAKLKGQD WEDVAKHVSA RVNSTKSPKT QTQCKNKIES MKKRYRSESA TAADASSWPL  120
YPRLDLLLRG NNASAASSSL IPPPLPPAAP PNTNCVIDAV EPPPQPPILL PPPPATLPPP  180
PLPPSPALPF GNGDQNSHGS NGLDRGIKED ILMDAKLSDN AAAPDQKNAT ATNSSSTPAL  240
YSDNKSKSKL RSKNKRKRAV EGWEIGESIR LLAEVVVRSE QARMETMRDI ERMRAEAEAK  300
RGEMDLKRTE IIANTQLEIA KLFASITKGS VDSSLRIGRS SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063175.10.0trihelix transcription factor ASIL2
TrEMBLA0A0V0I3C90.0A0A0V0I3C9_SOLCH; Putative trihelix transcription factor GTL1-like
STRINGSolyc01g096470.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-92sequence-specific DNA binding transcription factors