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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g038890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 39194.1 Da PI: 6.042 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.8e-31 | 172 | 230 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+ Sopen01g038890.1 172 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 230 79************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-31 | 162 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.026 | 166 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-27 | 169 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-37 | 171 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-26 | 173 | 230 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEEDWDLHAV VRGCAASSTA AAATTTATTN SCCSSFQPRQ DGNFFSFQDP FVPRFDNPIS 60 DFEELHNLYK PFFPKAQQIP LSPQNNTNNI PISPLSVLGG LQDLSPQQTL KQQQQQHIHQ 120 LNSTRLTQPK QSPLSVYGST TTSASHVQSP RPKRRKNQLK KVCQVPAEGL SSDMWSWRKY 180 GQKPIKGSPY PRGYYRCSTS KGCLARKQVE RNRSDPNMFI VTYTAEHNHP MPTHRNSLAG 240 STRQKPANSE AGTVSDSNKP TCSSPVSSPA CHSPATEKQE SSRDEREDIF EDDDDEFGSS 300 NMGLDNMEPA DDDFFEGLDE LAAQTTGDCF SDNFPGSMQL PWMSNNATTT AAGGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-24 | 156 | 233 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 7e-24 | 156 | 233 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061786.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | M0ZGA4 | 0.0 | M0ZGA4_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g095100.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 3e-75 | WRKY family protein |