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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopen01g038890.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
WRKY |
| Protein Properties |
Length: 355aa MW: 39194.1 Da PI: 6.042 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen01g038890.1 | genome | spenn | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.7 | 3.8e-31 | 172 | 230 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
Sopen01g038890.1 172 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 230
79************************9988****************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0010200 | Biological Process | response to chitin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MEEDWDLHAV VRGCAASSTA AAATTTATTN SCCSSFQPRQ DGNFFSFQDP FVPRFDNPIS 60
DFEELHNLYK PFFPKAQQIP LSPQNNTNNI PISPLSVLGG LQDLSPQQTL KQQQQQHIHQ 120
LNSTRLTQPK QSPLSVYGST TTSASHVQSP RPKRRKNQLK KVCQVPAEGL SSDMWSWRKY 180
GQKPIKGSPY PRGYYRCSTS KGCLARKQVE RNRSDPNMFI VTYTAEHNHP MPTHRNSLAG 240
STRQKPANSE AGTVSDSNKP TCSSPVSSPA CHSPATEKQE SSRDEREDIF EDDDDEFGSS 300
NMGLDNMEPA DDDFFEGLDE LAAQTTGDCF SDNFPGSMQL PWMSNNATTT AAGGV
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