PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g038390.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BES1
Protein Properties Length: 698aa    MW: 78283 Da    PI: 5.5154
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g038390.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.51.7e-43692131135
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                       ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++  s+p+ + +a+g+ +++ ++ss
  Sopen01g038390.2  69 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSRSQPQGTGSAGGTPTTMVTSSS 161
                       6899************************************************************************99999999999888887 PP

            DUF822  94 lq.sslk....s.....salaspvesysaspksssfpspssldsislasaas 135
                       ++  + +    s     s ++   +++++++ks+ +p +s +ds s+a +++
  Sopen01g038390.2 162 SHiPTQHippgSlkgvpSGFQNTDDQSACQMKSVLVPTSSPYDSSSTARSQT 213
                       7643221111112122266777778888888899999988888887765543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-3770202IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.17E-180255692IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.9E-197258692IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.8E-107264684IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70295309IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70316334IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70338359IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.6E-9421430IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.3E-70431453IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70504523IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70538554IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70555566IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70573596IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.6E-9576586IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.3E-70613635IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.6E-9664678IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.6E-9679693IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MASEMQRYDT NEDDEEMGMD VKEEDDEDED DEEKNAAMHA IAGFDGVHGS SSSSRFQHHQ  60
QYQEQPTPGG SRRCRPLEEK ERTKLRERQR RAITAKILAG LRRHGNYNLR VRADINDVIS  120
ALAREAGWVV LPDGTTFPSR SQPQGTGSAG GTPTTMVTSS SSHIPTQHIP PGSLKGVPSG  180
FQNTDDQSAC QMKSVLVPTS SPYDSSSTAR SQTSAMVADG LDTQNDPFLV GSADSIDKQV  240
KWVVDIHTKL QERDFAGTPY IPVYVMLPLG VINMKSELVD ADGLVKQLRV LKSINVDGVM  300
VDCWWGIVEA NAPQDYNWNG YKRLFQVVRE HKLKIKVVMS FHECGGNIGD DVCIPLPHWV  360
SEIGRSNPDI YFTDRAGRRN PECLSWGIDK ERVLRGRTAV EVYFDYMRSF RVEFDEFFED  420
GIISMVEVGL GPCGELRYPS NPVKHGWRYP GVGEFQCYDQ YLLKKLRKAA EARGHSFWAR  480
GPDNAGSYNS RPQETGFFCD GGDYDGYYGR FFLNWYSQVL IDHADRVLSL AKLAFDGTCI  540
AAKLSGIHWW YKTASHAAEL TAGFYNPSNR DGYVVIAAML KKHGAALNFK CAEMRMLEEP  600
VDFCDALGDP EGLAWQVLNA AWDVSLPVCS ENALLCHDRG GYNCLLEKAK PLNDPDGKHI  660
FAFTYLRLSP LLMDGQNYME FERFVKRMHG EAVLEFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-15226069111444BETA-AMYLASE
1byb_A1e-15226069111444BETA-AMYLASE
1byc_A1e-15226069111444BETA-AMYLASE
1byd_A1e-15226069111444BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059062.10.0beta-amylase 7 isoform X2
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3Q7EKY00.0A0A3Q7EKY0_SOLLC; Beta-amylase
STRINGSolyc01g094580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]