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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen01g037180.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
LBD |
Protein Properties |
Length: 276aa MW: 28241.1 Da PI: 7.5785 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen01g037180.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 125.2 | 3.3e-39 | 43 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
+C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lq+q+++l+a
Sopen01g037180.1 43 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVLTICFEAQARLRDPVYGCVAHIFALQHQVANLQA 135
7***********************9989***************************************************************** PP
DUF260 93 elallkee 100
el++l+++
Sopen01g037180.1 136 ELSYLQAH 143
***99986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010089 | Biological Process | xylem development |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MSSNNPSSST GGVSAPGGGV TSGSTSSGGG GGGGGGGGGG GGPCGACKFL RRKCVAGCIF 60 APYFDSEQGA AHFAAVHKVF GASNVSKLLL HIPVHKRLDA VLTICFEAQA RLRDPVYGCV 120 AHIFALQHQV ANLQAELSYL QAHLTTLELP TPPPLPPPPP PPPQQPQTML HQPSLTIADL 180 PTAGPSLPAA YDLSSLFDPM VIQPSWAMQQ QPRPPPPLPL DPRHFGGARA PMDMSPSTGG 240 GGGGGDLQEL ARELLHRHGS ATVPCTESSA LPPQTK
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Functional Description ? help
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Source |
Description |
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |