PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g036570.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 299aa    MW: 33453.2 Da    PI: 5.6532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g036570.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059158180123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k F++   L  H  +H
  Sopen01g036570.1 158 YRCETCNKFFRSYQALGGHRASH 180
                       9***********99999998887 PP
2zf-C2H212.10.00058207229123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C ++F++   L  H r+H
  Sopen01g036570.1 207 HQCPVCYRVFPSGQALGGHKRSH 229
                       79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.0E-10158182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-8158229No hitNo description
PROSITE profilePS5015710.118158185IPR007087Zinc finger, C2H2
SMARTSM003550.05158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
PfamPF139126.5E-13207229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369207230IPR007087Zinc finger, C2H2
SMARTSM003550.091207229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MRSHMMNLQL HQHETESIPS SSSWSDEEEK GKILNSSDVD ADDSVVVLPD KESETESSKN  60
PIRFKRSKRV RKSRKPNFMK ITEYYSSVVE TEPVSSISEN SPEEDVAHCL MMLSRDKWNK  120
NEQVDFYSDE EFKEENSAED SGGEVKVTTK SSRGRGKYRC ETCNKFFRSY QALGGHRASH  180
KKIKLSNEVI ESAANNNNNA VMEEKIHQCP VCYRVFPSGQ ALGGHKRSHT IGAVVATSVT  240
VLPPPPPAPA KLELSRTGGT SLIDLNFPPP MEDDDEIISQ VEVSAVSDAE FVNTINNQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071699.10.0zinc finger protein ZAT9-like
TrEMBLA0A3Q7EJY90.0A0A3Q7EJY9_SOLLC; Uncharacterized protein
STRINGSolyc01g090840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-43C2H2-like zinc finger protein