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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g034110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 360aa MW: 40946.8 Da PI: 8.6182 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 5.9e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ Sopen01g034110.1 34 VCTYYQK-GLCAYGNRCRYRHV 54 5******.***********997 PP | |||||||
2 | zf-CCCH | 20.7 | 7.2e-07 | 141 | 163 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ a+ G C++G +C+++Hg Sopen01g034110.1 141 RSICS-LAAAGKCPRGKNCPYIHG 163 56788.999**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.634 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-6 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.671 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.699 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.2 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 141 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.61E-12 | 198 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.8E-10 | 200 | 266 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 4.26E-4 | 206 | 266 | No hit | No description |
SMART | SM00184 | 3.1E-7 | 207 | 264 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.593 | 207 | 265 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 1.9E-7 | 207 | 264 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 231 | 240 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.441 | 294 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.18 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MSRRVLCKFF VNGACLKGEY CEFSHHWKDP PNNVCTYYQK GLCAYGNRCR YRHVKVSEQH 60 SLPSSSAPAQ HLFSASPPTT LSPGMLADGT EILSGISSEY LASGRPFYSP NQPVWSENSE 120 HHDAAVIDNI VELKRMNPAD RSICSLAAAG KCPRGKNCPY IHGDLCPICA KNCLHPFRPQ 180 EREEHIRICE KRQKRLELLK HSQEIECSVC LERVLSKTTA AERKFGILFE CDHPFCISCI 240 RNWRSGTPSS GVDINSTFRT CPVCRKLSYF VIPSVTWFST KEEKQIILDS YKAKLRSIDC 300 KHYDFGNGTC PFGNSCFYKH QYRDGHLEEV VPRHLGHENG RTVIAKNIRL SDLLGNLRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063183.1 | 0.0 | E3 ubiquitin-protein ligase makorin isoform X1 | ||||
Swissprot | Q5ZA07 | 1e-155 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A3Q7EIT0 | 0.0 | A0A3Q7EIT0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g087030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3386 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-148 | C3H family protein |
Publications ? help Back to Top | |||
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