PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g033520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 682aa    MW: 75972.6 Da    PI: 10.098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g033520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091767448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
  Sopen01g033520.1 17 WSTWEELLLAFAVKRHGLKDWESVAMELQnrvslpALLTAQICKEKYRDLR 67
                      *********************************99889*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481967IPR017877Myb-like domain
SuperFamilySSF466893.43E-61172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-51166IPR009057Homeodomain-like
SMARTSM007172.6E-41369IPR001005SANT/Myb domain
CDDcd001671.62E-51766No hitNo description
PfamPF002498.5E-81766IPR001005SANT/Myb domain
SMARTSM002971.2E-15302411IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-16312413IPR001487Bromodomain
SuperFamilySSF473706.15E-18312409IPR001487Bromodomain
CDDcd043692.47E-15313406No hitNo description
PfamPF004392.4E-10317396IPR001487Bromodomain
PROSITE profilePS5001412.94321392IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MEKDSAAATT TTKKTIWSTW EELLLAFAVK RHGLKDWESV AMELQNRVSL PALLTAQICK  60
EKYRDLRRRF MNSYNNSYDE KIIEQDVDGN GDVTIPWIEE LRKLRVAELQ QEVQRYDLSI  120
QSLELKVKKM EEEREQSLKA QSLDDGQKPD LEDVKEERSQ NDKNSGADVK PEDSTGKAVS  180
SEESDRENRS FNESNSTENR ETGVKNEPEP VEIGEDKPVQ EIKPVSEEDS YNDSSSDRQE  240
EKKARRDSGD LRDTVSGSKE ETRENSDVQS TATLTKRKRQ RGGDGGRSGG DAAEMGSPAV  300
GIKREGAAKS EPLVEFLDII RSHKRGSVFK RRLDSQKTDK YKSMIRQHMD LETVQARIDD  360
GSYCSCPSKF YLDLLLIFNN AIVYFAKSSS ETTAANELRG IVMEELKKTR TQSKDLSPFK  420
IQPKPELERS DSLLAKHKST VPIVVCRKRS SISAKAAASS GNNKTEKPAD SKPPLNPKPP  480
AVKSSSNEEE SSIKLGVKEK PVTGVRSMRR SSKGRSNNNN NNNNASQSNS NQNTTAKQSN  540
SSGEKKEEVK PEKKKEESKK RGAAADFLKR IKKNSPTKGT LVEALKNNPP EDVVVVKGKN  600
SKDQQKKKID ERREAPVRRS GGGGGGGGGG SGASKDEGSP SKRSVGRPPK RGGREVVVQE  660
KRGRENSEKE DSTKRPKKRS RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KRKRQR
2619630SGGGGGGGGGGS
3673681KRPKKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063169.10.0ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800
TrEMBLA0A3Q7EH340.0A0A3Q7EH34_SOLLC; Uncharacterized protein
STRINGSolyc01g073950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-61DNA-binding bromodomain-containing protein