PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g033180.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 376aa MW: 42027 Da PI: 9.7662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g033180.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	333	352	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L+ H++++ Sopen01g033180.1 333 CSQCGKPF-KPEKLHAHMKSC 352 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	3.0E-41	15	224	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MEGQNHGGGE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLKDIKRW LGELRGKDMP 60 ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE IPSITIIKDV SSGEKEVTKE 120 QTKQEDQDQV FLMDSSKKIS SEIEEDSQNI SSETSTLTTN SPKFEEEEEK KIGNNSSFSS 180 NSSSSISSFG SMKTKKKTED SEEKTETSQN DEKTSKNPKL NKSRSYSNGA SSIFRNLITC 240 GAVDTNDSGI IPLKKNKTSS AAAGEKTVSF SSEICKADKI GGSQRIFGTA WNQQQTNARK 300 SCDGAFSMSK NRSEFGSRRS VSANYKPING PNCSQCGKPF KPEKLHAHMK SCKGMKALSK 360 AATHKTYKDS PKIDSL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MEGQNHGGGE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLKDIKRW LGELRGKDMP  60
ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE IPSITIIKDV SSGEKEVTKE  120
QTKQEDQDQV FLMDSSKKIS SEIEEDSQNI SSETSTLTTN SPKFEEEEEK KIGNNSSFSS  180
NSSSSISSFG SMKTKKKTED SEEKTETSQN DEKTSKNPKL NKSRSYSNGA SSIFRNLITC  240
GAVDTNDSGI IPLKKNKTSS AAAGEKTVSF SSEICKADKI GGSQRIFGTA WNQQQTNARK  300
SCDGAFSMSK NRSEFGSRRS VSANYKPING PNCSQCGKPF KPEKLHAHMK SCKGMKALSK  360
AATHKTYKDS PKIDSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015071709.1	0.0	protein UPSTREAM OF FLC
Refseq	XP_027775369.1	0.0	protein UPSTREAM OF FLC
TrEMBL	A0A3Q7EIN1	0.0	A0A3Q7EIN1_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400079895	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15