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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopen01g030700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
M-type_MADS |
| Protein Properties |
Length: 197aa MW: 21685.6 Da PI: 6.5211 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen01g030700.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 74 | 1.2e-23 | 15 | 61 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+n++n qvtfskRr+g++KKA+ELS+LC+a+va++ fs+++k+y +
Sopen01g030700.1 15 MQNQTNLQVTFSKRRAGLFKKASELSTLCGANVAIVAFSPSNKVYAF 61
68*******************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MRKPNGRKKI EIAKMQNQTN LQVTFSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA 60
FGHPSVESIV DKFVGDNHPP DTDDPNPIIV AHQNANIDEI NEKLNRLEIS LKRERKHGQA 120
LQALRIEPPN EKLSFFDLMI LCESLEAADK NVEKLAIQLV ECGIEFPYQT IGSALAPLRD 180
RESTPSDSGE GSSGSGE
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3kov_A | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 1e-17 | 6 | 91 | 1 | 86 | Myocyte-specific enhancer factor 2A |
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