PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g029500.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 496aa    MW: 51817.1 Da    PI: 8.0405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g029500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-125276327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C +++rtG+C yG rC+F+H++
  Sopen01g029500.1 52 EPDCIYYLRTGFCGYGVRCRFNHPR 76
                      799********************96 PP
2zf-CCCH375.6e-1298122327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++++rtG Ck+G++Ck++H++
  Sopen01g029500.1  98 QPVCQYYMRTGMCKFGASCKYHHPR 122
                       689********************96 PP
3zf-CCCH35.91.3e-11143167226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C++f +tG+Ck+G +CkF+H+
  Sopen01g029500.1 143 GEKECSYFVKTGQCKFGVTCKFNHP 167
                       7899********************9 PP
4zf-CCCH35.51.6e-11321344427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        +C++++++G CkyG++C+++H+p
  Sopen01g029500.1 321 QECQYYMKYGDCKYGSSCRYHHPP 344
                       58********************97 PP
5zf-CCCH34.82.8e-11366390327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        + C++fa++G Ck+G++CkF H++
  Sopen01g029500.1 366 APVCSHFAQNGVCKFGPSCKFDHPM 390
                       589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0334977IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-95276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55495123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-698122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-898122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436141169IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5143169IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4147166IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638317345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6320344IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9321344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4323344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6362389IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784363391IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8366390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5368388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MERYSGTQAM EGEPVDPVSE WAVPGGETGL EEPMWQLSLG TGPEPYPERP NEPDCIYYLR  60
TGFCGYGVRC RFNHPRDRTS VLGAMRATGG EYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGVSPAS VTVNVYGYPL RPGEKECSYF VKTGQCKFGV TCKFNHPLPA GAQVPAPAAG  180
PGSGPGPLTA PAAVPAPHIY PPAVQSPSVQ SAQQYGVVSG NWPVARPTLL PGSYIPGTYG  240
SMLLPPGMVP LPGWTPYPAP VNPVPSPSTQ LAAAAGPMYG LSQLSPSAPA YTGPYLSVPS  300
SAGPSSSSQK EHAFPERPGL QECQYYMKYG DCKYGSSCRY HHPPEWSGPK TSFILSAMGL  360
PLRPGAPVCS HFAQNGVCKF GPSCKFDHPM GLTYSSSSSS LADMAVAPYP VGSAVGTLAP  420
SSSSSDLRPE VNTGSGRDGF STQVSSMNTS SGSVGSMFSK GGPASHSGVQ QSVQSSNPSG  480
GSSSSAGHGS EARTSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062328.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-153C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A3Q7EGL40.0A0A3Q7EGL4_SOLLC; Uncharacterized protein
STRINGSolyc01g067550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-120C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]