PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g026880.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 677aa MW: 74780.6 Da PI: 6.3867

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g026880.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.7	6.1e-29	211	264	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Sopen01g026880.1 211 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264 79*****************.******************************8 PP
2	Response_reg	83.1	8.5e-28	31	139	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+p+ +++l+++l++ +y ev+ + +e al +l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Sopen01g026880.1 31 VLVVDDDPTCLKILEKMLKNCHY-EVTKCNRAEVALSYLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKGVT 121 89*******************.***********999999******************6654.8**************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ +e+l + Sopen01g026880.1 122 HGAYDYLIKPVRIEALKN 139 ************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	9.2E-184	11	668	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	4.27E-36	28	151	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.1E-42	28	173	No hit	No description
SMART	SM00448	1.4E-31	29	141	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.647	30	145	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	6.5E-25	31	139	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.44E-28	32	144	No hit	No description
PROSITE profile	PS51294	11.523	208	267	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-20	209	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-30	210	269	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-25	211	264	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-9	213	263	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MNIGSGSVLS STGSWKSGDV VSDQFPVGLR VLVVDDDPTC LKILEKMLKN CHYEVTKCNR 60 AEVALSYLRE NKNGFDIVIS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DSKDVVMKGV 120 THGAYDYLIK PVRIEALKNI WQHVVRKKKH EWRDNNFDQS GSVEEGDRQQ KQSEDVDYSS 180 SANEGNWKNS KKRKEEDDEG EERDDTSSLK KPRVVWSVEL HQQFVQAVHQ LGIDKAVPKK 240 ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQNGLN NSFMGRSDAT FGTISSLNGL 300 DLQAIAAAGQ IPAQSLATLQ AAALGRSASK SAISMPLVDQ RNLFSFENSQ VRFPEGQQQL 360 NNSNKQIDLL HGIPTTMEPK QLANLHHPSQ SFMGMNMQVN NSMAQHNNSV IMRMSQSQPR 420 AQMLSGANNG SQVSRLPLSM QQSLSSEGLP GAVLAQSRII DNARASAYNP VSQASSMVDF 480 SVNQSKELQN YNFSLGSNSA GMSTLTNRGM LQEEVNSDIK GSRGFPSNYD IFNDLHQQPK 540 PQNWGLQNVG SSFDSSHHPS IQGSQGVPSQ FLLQQGISST HNNGQNRNGP IGKPMYTNGE 600 ESGHTNLMGG PQLNSVSRNM LAVKAERFLD ADYQSTNFPE QFGQDDLMSA FLKQQGSVGP 660 VETEFGFDGY TLDNLPV

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MNIGSGSVLS STGSWKSGDV VSDQFPVGLR VLVVDDDPTC LKILEKMLKN CHYEVTKCNR  60
AEVALSYLRE NKNGFDIVIS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DSKDVVMKGV  120
THGAYDYLIK PVRIEALKNI WQHVVRKKKH EWRDNNFDQS GSVEEGDRQQ KQSEDVDYSS  180
SANEGNWKNS KKRKEEDDEG EERDDTSSLK KPRVVWSVEL HQQFVQAVHQ LGIDKAVPKK  240
ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQNGLN NSFMGRSDAT FGTISSLNGL  300
DLQAIAAAGQ IPAQSLATLQ AAALGRSASK SAISMPLVDQ RNLFSFENSQ VRFPEGQQQL  360
NNSNKQIDLL HGIPTTMEPK QLANLHHPSQ SFMGMNMQVN NSMAQHNNSV IMRMSQSQPR  420
AQMLSGANNG SQVSRLPLSM QQSLSSEGLP GAVLAQSRII DNARASAYNP VSQASSMVDF  480
SVNQSKELQN YNFSLGSNSA GMSTLTNRGM LQEEVNSDIK GSRGFPSNYD IFNDLHQQPK  540
PQNWGLQNVG SSFDSSHHPS IQGSQGVPSQ FLLQQGISST HNNGQNRNGP IGKPMYTNGE  600
ESGHTNLMGG PQLNSVSRNM LAVKAERFLD ADYQSTNFPE QFGQDDLMSA FLKQQGSVGP  660
VETEFGFDGY TLDNLPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	4e-21	207	270	1	64	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:11691951, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:19039136}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000269\|PubMed:20605455}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060321.1	0.0	two-component response regulator ARR2
Swissprot	Q940D0	0.0	ARR1_ARATH; Two-component response regulator ARR1
TrEMBL	A0A3Q7EF96	0.0	A0A3Q7EF96_SOLLC; Two-component response regulator
STRING	Solyc01g065540.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3191	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	1e-169	response regulator 1

Publications ? help Back to Top
Bürkle L,Meyer S,Dortay H,Lehrach H,Heyl A In vitro recombination cloning of entire cDNA libraries in Arabidopsis thaliana and its application to the yeast two-hybrid system. Funct. Integr. Genomics, 2005. 5(3): p. 175-83 [PMID:15714319] Moubayidin L, et al. Spatial coordination between stem cell activity and cell differentiation in the root meristem. Dev. Cell, 2013. 26(4): p. 405-15 [PMID:23987513] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Kurepa J,Li Y,Perry SE,Smalle JA Ectopic expression of the phosphomimic mutant version of Arabidopsis response regulator 1 promotes a constitutive cytokinin response phenotype. BMC Plant Biol., 2014. 14: p. 28 [PMID:24423196] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] D'Alessandro S,Golin S,Hardtke CS,Lo Schiavo F,Zottini M The co-chaperone p23 controls root development through the modulation of auxin distribution in the Arabidopsis root meristem. J. Exp. Bot., 2015. 66(16): p. 5113-22 [PMID:26163704] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Moubayidin L, et al. A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis. Planta, 2016. 243(5): p. 1159-68 [PMID:26848984] Muraro D, et al. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. J. Theor. Biol., 2016. 404: p. 182-205 [PMID:27157127] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Kushwah S,Laxmi A The interaction between glucose and cytokinin signaling in controlling Arabidopsis thaliana seedling root growth and development. Plant Signal Behav, 2017. 12(5): p. e1312241 [PMID:28467152] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Liu B,De Storme N,Geelen D Cold interferes with male meiotic cytokinesis in Arabidopsis thaliana independently of the AHK2/3-AHP2/3/5 cytokinin signaling module. Cell Biol. Int., 2017. 41(8): p. 879-889 [PMID:28618065] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Rong XF, et al. Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 756-764 [PMID:29186581] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938] Waldie T,Leyser O Cytokinin Targets Auxin Transport to Promote Shoot Branching. Plant Physiol., 2018. 177(2): p. 803-818 [PMID:29717021]