PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g016580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 265aa    MW: 30426.1 Da    PI: 6.5278
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g016580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.84.1e-2351392128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk.....kvka..eek..ewy.fFskrdkkyatgkrknr.atksg 81 
                         GfrF+Ptd e v  +L + ++gk ++ + +  ++vd y k ePwd+ +     +  +  e++  + y fF+++ kk+ +++r +r + ++g
  Sopen01g016580.1   5 KEGFRFSPTDAEAV-TFLLRFIAGKFMNDSGFiTTHVDTYgKQEPWDIYShgvacS--NddEDNdcSQYrFFITKLKKK-SESRYSRdVGNKG 93 
                       68************.8999999999988878835566877367*****73356541..222333343352666666655.56788886889** PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        Wk++ k+k+v +k+g ++g kk++ + + +  + ++ dW+m+ey+l
  Sopen01g016580.1  94 SWKQQDKSKSVRRKGGPVIGYKKSMSYMN-KGYNKKNGDWLMKEYTL 139
                       ***************************94.5555589********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-214161IPR003441NAC domain
PROSITE profilePS5100525.0344162IPR003441NAC domain
PfamPF023653.0E-146139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGNLKEGFRF SPTDAEAVTF LLRFIAGKFM NDSGFITTHV DTYGKQEPWD IYSHGVACSN  60
DDEDNDCSQY RFFITKLKKK SESRYSRDVG NKGSWKQQDK SKSVRRKGGP VIGYKKSMSY  120
MNKGYNKKNG DWLMKEYTLP EYLLDKFDKD CRDYVLCSIK KRTRSKTHTK EKLKLVNIVP  180
EESTNLEDQS SATVGSTSFT EELQGRGVDA GEYLPQLELQ NDMHEGTSIF VETLPAPYTF  240
EATSMLDFDY QYLPADFDFL RSITA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088625.10.0NAC domain-containing protein 78-like
TrEMBLA0A3Q7ECE50.0A0A3Q7ECE5_SOLLC; Uncharacterized protein
STRINGSolyc01g021730.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.18e-13NAC domain containing protein 60