PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g003710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 706aa    MW: 79196.2 Da    PI: 6.2468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g003710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07126146425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C ff++ G+C+ Gd+C F+H
  Sopen01g003710.1 126 VPCIFFQQ-GICRKGDKCGFMH 146
                       69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4083361IPR000571Zinc finger, CCCH-type
SMARTSM003560.00443360IPR000571Zinc finger, CCCH-type
PfamPF156632.5E-113487No hitNo description
PROSITE profilePS5010311.2356389IPR000571Zinc finger, CCCH-type
SMARTSM003560.126588IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892122149IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6123147IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5126147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4127147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MVGPTPPSTE VPVPASAPLP ATVQLSAEEE AVKSNTDCVY FLASPLTCKK GSECEYRHSD  60
MARLNPRDCW YWLNGNCLNP KCAFRHPPLD GILEAQAPTA MGFSAAYKVS VAPMPQVPYA  120
SSKQDVPCIF FQQGICRKGD KCGFMHAPSF VSNNPTQPPV STASSETSTV KKAFGGVEKS  180
VQGTELSQTN ALKPCELPKP VIKLGNHLTK KDNTFDEKLL PPNSVIKREH SRYKPPSAPP  240
TNGISFSAPN RKQQPIGIDD HNSMQYKDDE ISREPSPGFD VLVDDELRGS DYYHGEDHYG  300
GRRENGGRNE YDMGDSADYD SVADMDRDMY PDVRGYDSYD RLQGHYAWEQ RIASSERIPG  360
VSAHPERRRY GTVDSPEHVE ISDLRHQLSK HRRGSGLKSV IGHDFSSEKH VEGRANKSSR  420
RDARYLPSHD SSLNGGRLRG RIKLPVRSSS PDDRADLRLD RARDRGRLSS ERPQPYSYQG  480
RPRDRIKGRM QEDINSDGRN NRVHHVRRDI INVNNSDFLR PKSLAELKGR KTAESNEQQP  540
PRKRKFQKLD GGEDLSFEGP MPLKEILKRK RGGEGNMSSG GSEDDQHERK HQTERTSMTS  600
RSVDFPSSVT KNGSDLPIQK EDSKLVPKSA DHQSPLYRSE NELEAEEEMV VEGAGTQDHK  660
GYDQRDGHDD DYEPVEGEDY NFDEGDPDDE FLDDDDDDFA KKLGVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062603.10.0zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A3Q7E8X40.0A0A3Q7E8X4_SOLLC; Uncharacterized protein
STRINGSolyc01g008170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633