PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g001040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 339aa    MW: 38489.6 Da    PI: 8.648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g001040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-064870123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C++ F r  nL+ H r+H
  Sopen01g001040.1 48 YICEICNQGFQRDQNLQMHRRRH 70
                      89********************9 PP
2zf-C2H218.26.8e-06125146223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk +  +s++k H++t+
  Sopen01g001040.1 125 ICDKCGKAYAVQSDYKAHLKTC 146
                       7*******************98 PP
3zf-C2H210.70.0016154172523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr +++  H+ ++
  Sopen01g001040.1 154 DCGRVFSRVESFIEHQDSC 172
                       9**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-64770IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.34E-74770No hitNo description
SMARTSM003550.00654870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8664870IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PROSITE patternPS01359050129IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035521088118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5115145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.34E-7119144No hitNo description
SMARTSM0035541124151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLDNSSSSEA LINSGDSNRR KRRPAGTPDP DAEVVSLSPK TLLESDRYIC EICNQGFQRD  60
QNLQMHRRRH KVPWKLVKRE IDVKKRVFVC PEPSCLHHDP CHALGDLVGI KKHFRRKHSD  120
NKQWICDKCG KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD SCTIRRIRPR  180
LQPITAACSS SDTNLPKLAI MPLPKNSTNL ELGLKSSSHH ENTIEEAHLK LSIGSSSPNH  240
EVLNLVMAEK AYAEEARRSA KREMEYAERE FENAKRIRQQ AQAEIERAKK LKEEAINRIS  300
SSILEITCHA CKNKFQTIDN NVDSSPPMSY MSSDGEGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-17122172555Zinc finger protein JACKDAW
5b3h_F6e-17122172555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069538.10.0zinc finger protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-137IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A3Q7E8970.0A0A3Q7E897_SOLLC; Uncharacterized protein
STRINGSolyc01g005060.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-137C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]