PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen00g013520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 48880.1 Da PI: 5.9058 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.7e-13 | 281 | 327 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L+ Sopen00g013520.1 281 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 327 799***********************6.....4*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.9E-50 | 27 | 216 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.218 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.71E-15 | 280 | 330 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-17 | 280 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-16 | 281 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 281 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-17 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MEQLVVSSSP MAAAPPPVDV NQVPLGLQQM LQYVVKSQPE WWAYAIFWQT SNDDEGKNFL 60 AWGDGYFQGD GVVINNKGGS SGSGGSSSSL KSQAQSERKK VIKGIQALMD GNGDTDLVDD 120 GDVTDTEWFY VMSLARSFSA GDGSVTGKAF GSDDFLWITG PDQFQLHYSC ERAKEAQIHG 180 IQTLVSIPTS NGVFELGSTQ LIKQNLSLVQ QVKSLFLCCP PIQFLEKTIS FADIGLVTGL 240 QQDDNDYKLR ENSKKPHPVV AKKRGRKPKG GEEDAHMAAL NHVEAERQRR EKLNHRFYAL 300 RSVVPNVSRM DKASLLSDAV SYINQLKAKV DELELQLIDH TKKPKIVTES SSADNQSATT 360 SSDDQVIKAA NSTAAPEVEV KIVGTDAMIR VQSENVDYPS AKLMIALQNL QMQVXIYKCK 420 STMPAFHPSI ISSFMMLWLE FLKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-33 | 27 | 216 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-33 | 27 | 216 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-33 | 27 | 216 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-33 | 27 | 216 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 266 | KKPHPVVAKKRGRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230021.1 | 0.0 | transcription factor MYC2-like isoform X1 | ||||
Refseq | XP_004230022.1 | 0.0 | transcription factor MYC2-like isoform X2 | ||||
TrEMBL | A0A3Q7EMT2 | 0.0 | A0A3Q7EMT2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g096370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 5e-72 | bHLH family protein |