PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g008100.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 572aa    MW: 60759.6 Da    PI: 10.4925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g008100.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08203249146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                       r++WT  Ed  l+ av+++G g+W+ I +t     Rt+ q+  rw +
  Sopen00g008100.1 203 RKAWTGAEDMELITAVQKYGEGNWANILKTDFkGDRTASQLSQRWAT 249
                       789*************************9844469999999999966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.828198255IPR017930Myb domain
SuperFamilySSF466891.36E-12199253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-14199254IPR009057Homeodomain-like
SMARTSM007179.7E-8202253IPR001005SANT/Myb domain
PfamPF002491.8E-6203249IPR001005SANT/Myb domain
CDDcd116601.06E-14204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MVEKRKLNKR GFVTEDDMST LLQRYTAFTM LTLLQEVGQV NGSKIDWNDL VKKTATGITS  60
AREYQMVWRH LAYRKVFLDK FDDNAQPMDD DSDLEFELES FPPVSSEAST EAAAWGKVFI  120
ASGALRDSNM SNGNTVEASL TIQIPNGQTS GTVAANSLQG ISAFGKKLTV PVTVQTQPMP  180
SVSAAEGLDT TGPASANLPR RRRKAWTGAE DMELITAVQK YGEGNWANIL KTDFKGDRTA  240
SQLSQRWATI RKQHVMMVGN GSHLSEAQLA ARHAVSMAFR DNVKAACPIS PNAGTNSGSG  300
PSNSSHFAAA ADVASAGPQS KHQQELVPSK PIIPKIPLPK PAINPDPMVK PAAMAASSRV  360
ATHSGAAASL QKAALSKKGV HIMPGGTPAV KSSVPGSFNG LPSNVHFMRT GLVSRPAGPS  420
NAPQSGTQQL QAPRTQQLQA PRSVSPAVQP KPTTVPSRTN ASSGVRSAPS SYPTTALDVK  480
SKAAVSQENQ IAVLSNTRGE KTQVIRAASL ANTPQQQVPK DQNFGNLLSG KVEGQTSVLG  540
DTVKKLGGES KASRIWVQEE LIPSQETTSN KK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237998.10.0uncharacterized protein LOC101255687
TrEMBLA0A3Q7G9160.0A0A3Q7G916_SOLLC; Uncharacterized protein
STRINGSolyc04g076360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-65MYB_related family protein