PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g100150.1.1
Common NameLOC101250976
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 169aa    MW: 18630 Da    PI: 7.5377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g100150.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601376.8e-43141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k++++l+e +r da+ss+vyeA+ar++dP+yG+vg+i++l++q+e l+
  Solyc12g100150.1.1  14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMIQELQEYQRGDAVSSMVYEANARIKDPIYGCVGTISSLHHQIEFLH 104
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la +++e
  Solyc12g100150.1.1 105 TQLAIAQAE 113
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.39813114IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4214111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMIQ  60
ELQEYQRGDA VSSMVYEANA RIKDPIYGCV GTISSLHHQI EFLHTQLAIA QAELVHMKMQ  120
QFSSMSGGGG TAANSPKNVW SPSSQHLQSE VYSEFEIYDS VQQPQINI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-45101257122LOB family transfactor Ramosa2.1
5ly0_B1e-45101257122LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.234370.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g100150.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127920.0Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252871.11e-125LOB domain-containing protein 4
SwissprotQ9SHE96e-61LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3Q7JE491e-123A0A3Q7JE49_SOLLC; Uncharacterized protein
STRINGSolyc12g100150.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-62LOB domain-containing protein 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]