PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g100140.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 451aa MW: 49418.1 Da PI: 5.1787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g100140.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.7e-11	387	432	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L A +YIk+L+ Solyc12g100140.1.1 387 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 432 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.5	381	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-15	384	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-11	385	436	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-14	386	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-12	387	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-8	387	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEEKSMDHRS HQQQQMTSGL TRYRSAPSSY FTNLLSSNNP AGVSGGSGNC GYARDDFDQL 60 LNPHASNSGI KQVFDRFVAN IGPQDSNPDG LIDDTQQNQN PMSNMDVRSE VLAPMKQEHE 120 AQMNYQCQEQ QSQNSQFVAP VKQEIAQQNS DYSLASQMNY QNHNATDFTS GMDNFGRYNR 180 LNHTKMDGGF GTGSSDSNLT RYNSSPAGFF ALVNIENEYG ALRGIGSYGA GSGTNAAGEV 240 SFSNPSRFSS QTALPSGQPT SSGLLAPISE FGAKSIEESR RGHESFGKGH KSDESYMAGF 300 ALPSWDDSQI LTDDFLQVPE DDESGSFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL 360 SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISER MRKLQELVPN MDKQTNTADM 420 LDFAADYIKE LETQVKALSE TRSKCTCLHE *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEEKSMDHRS HQQQQMTSGL TRYRSAPSSY FTNLLSSNNP AGVSGGSGNC GYARDDFDQL  60
LNPHASNSGI KQVFDRFVAN IGPQDSNPDG LIDDTQQNQN PMSNMDVRSE VLAPMKQEHE  120
AQMNYQCQEQ QSQNSQFVAP VKQEIAQQNS DYSLASQMNY QNHNATDFTS GMDNFGRYNR  180
LNHTKMDGGF GTGSSDSNLT RYNSSPAGFF ALVNIENEYG ALRGIGSYGA GSGTNAAGEV  240
SFSNPSRFSS QTALPSGQPT SSGLLAPISE FGAKSIEESR RGHESFGKGH KSDESYMAGF  300
ALPSWDDSQI LTDDFLQVPE DDESGSFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL  360
SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISER MRKLQELVPN MDKQTNTADM  420
LDFAADYIKE LETQVKALSE TRSKCTCLHE *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16970	1e-71	flower\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g100140.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212792	0.0	Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010314674.1	0.0	transcription factor bHLH130-like
TrEMBL	M1C7B5	0.0	M1C7B5_SOLTU; Uncharacterized protein
STRING	Solyc12g100140.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39
Representative plant	OGRP511	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	7e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc12g100140.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]