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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc12g099140.1.1 |
| Common Name | LOC101244852 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 301aa MW: 35121.7 Da PI: 6.1758 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g099140.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52 | 1.6e-16 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd l + ++++G g+W++ ar g++Rt+k+c++rw++yl
Solyc12g099140.1.1 37 RGSWTVEEDFTLMNHIALHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 84
89********************************************97 PP
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| 2 | Myb_DNA-binding | 50.6 | 4.6e-16 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
Solyc12g099140.1.1 90 RGNITLEEQLLILQLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 133
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MDHHYHQYVE FGLKREDNID SNDRKGDENN NNLDLKRGSW TVEEDFTLMN HIALHGEGRW 60
NSLARSAGLK RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILQLHSRWGN RWSKIAQYLP 120
GRTDNEIKNY WRTRVQKQAK QLKCDVNSKE FKDTLHYLWI PRLVERIQAS SNSNSNNQVN 180
LQQTNDNIII TNNNNIINNN NIVPNMNFTQ ENYSSTTTTS SENSIGTQIS DMSDNCYTNY 240
PLNQGDYGEI LISPTGDYFQ HGGIFDDNNH HQNMNQLFLD DNVCDNMWNS DDMLFLQQLN 300
*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Yang A,Dai X,Zhang WH
A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
J. Exp. Bot., 2012. 63(7): p. 2541-56
[PMID:22301384] - Chen X, et al.
The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
Plant Cell Physiol., 2014. 55(3): p. 604-19
[PMID:24399239] - Lv Y, et al.
New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
Plant Cell Environ., 2016. 39(3): p. 556-70
[PMID:26381647] - Hong Y,Zhang H,Huang L,Li D,Song F
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
Front Plant Sci, 2016. 7: p. 4
[PMID:26834774]
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