|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc12g098520.1.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
HSF |
Protein Properties |
Length: 479aa MW: 53375.1 Da PI: 5.3602 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc12g098520.1.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 112.6 | 2.7e-35 | 19 | 109 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+
Solyc12g098520.1.1 19 FLSKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFLKDQKH 100
9****************************************************************999.........************** PP
XXXXXXXXX CS
HSF_DNA-bind 93 llekikrkk 101
ll++i+r+k
Solyc12g098520.1.1 101 LLKNIHRRK 109
*******98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MDVISAAVAA GGGGGPAPFL SKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH LLKNIHRRKP IHSHSHPPGS 120 TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLI 180 FVEKAIQNPD FVERLAQKLE SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN 240 LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNEDGGSPAH RRISEGWSRE VQLRTVGAIY 300 TPEAIELSDT GTSFMLKMDS SLPHASSNAE SSRLHSLPQS LTSNEEVDGH ISCQLNLSLA 360 SCLSQVDKNQ YSARMPQIGQ EIGKCFESQS DANDKIPPTD DKSLPPSHDA TTNKQVPAAA 420 PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNIYDEQDER KSNQGVASNT RKVEHLTL*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |