PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 126aa MW: 14199.6 Da PI: 10.2635

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g096200.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	5.9e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd ll +++++G g+W++ + g+ R+ k+c++rw +yl Solyc12g096200.1.1 14 KGPWSIEEDMLLTSYIHLHGEGNWRSLPMNAGLLRCSKSCRLRWVNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.2	6.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEd+l++ + +lGg+ W++Ia ++ gRt++++k++w++ Solyc12g096200.1.1 67 RGNFSPEEDDLIIPLYSLLGGR-WSLIAGRLS-GRTDNEIKNHWHTN 111 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.35	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.26E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.58E-9	16	61	No hit	No description
PROSITE profile	PS51294	24.165	62	116	IPR017930	Myb domain
SMART	SM00717	1.6E-12	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-13	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.63E-9	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-23	69	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MGRTPCCSKV GMKKGPWSIE EDMLLTSYIH LHGEGNWRSL PMNAGLLRCS KSCRLRWVNY 60 LRPGIKRGNF SPEEDDLIIP LYSLLGGRWS LIAGRLSGRT DNEIKNHWHT NLLKKLKASG 120 IEPKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-22	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269\|PubMed:19211694, ECO:0000269\|PubMed:22575450, ECO:0000269\|PubMed:25060192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g096200.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269\|PubMed:19211694, ECO:0000269\|PubMed:25060192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027769640.1	2e-85	transcription factor MYB8-like
Swissprot	Q9M0J5	3e-57	MYB41_ARATH; Transcription factor MYB41
TrEMBL	A0A3Q7JEH6	7e-86	A0A3Q7JEH6_SOLLC; Uncharacterized protein
STRING	Solyc12g096200.1.1	1e-86	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	1e-59	myb domain protein 41

Link Out ? help Back to Top
Phytozome	Solyc12g096200.1.1
Entrez Gene	101245745

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]