PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g089240.1.1
Common NameLOC101247504
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 330aa    MW: 36391.9 Da    PI: 7.3692
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g089240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.42.8e-08442537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         C+ +++ke++ fC+ ++  lC+dC    H+       H
  Solyc12g089240.1.1  4 QCDVCNKKEAIVFCTADEAALCDDCDHRVHHVnklaskH 42
                        7*************************9997323555555 PP
2zf-B_box21.93.6e-075492238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        ++++C+ ++e +  lfC++++  +C++C   +Hk   Ht
  Solyc12g089240.1.1 54 QAPMCDICQERRGFLFCQQDRAIMCRECDIPIHKAneHT 92
                        7899*******9*********************877865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000218.89E-7347No hitNo description
PfamPF006433.1E-6443IPR000315B-box-type zinc finger
SMARTSM003367.2E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.62753100IPR000315B-box-type zinc finger
SMARTSM003363.8E-1453100IPR000315B-box-type zinc finger
PfamPF006431.4E-55492IPR000315B-box-type zinc finger
CDDcd000214.38E-95692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKIQCDVCNK KEAIVFCTAD EAALCDDCDH RVHHVNKLAS KHQRFSLVQP SPKQAPMCDI  60
CQERRGFLFC QQDRAIMCRE CDIPIHKANE HTQKHNRYLL TGIKLSANSA LYSAPSQSQS  120
QSQSAISSAD SCVSNLKSKD STSKPVAGSV FVSPAIISNS TKGGAVSSAV ESVKVVKEKV  180
GGCNNNVQFV NGGGNNLTSS ISEYLEMLPG WHVEDFLDCS TPNVYSKNIG DEDMLSFWDT  240
DLESQFSSFP PQNVGIWVPQ APPLQESKQE TQIQFFPSQN LNFGGQIGLK ESREVTNIKS  300
SRKWTDDNSF AVPQMKPPST SFKRTRTLW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.126670.0fruit| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g089240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9281927e-06S.lycopersicum DNA sequence from clone LE_HBa-142A5, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252795.10.0B-box zinc finger protein 20
TrEMBLA0A3Q7JC340.0A0A3Q7JC34_SOLLC; Uncharacterized protein
STRINGSolyc12g089240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Representative plantOGRP29841130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-53DBB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]