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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc12g088790.1.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
bHLH |
| Protein Properties |
Length: 122aa MW: 14000.4 Da PI: 10.8168 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g088790.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 28.3 | 3.2e-09 | 43 | 83 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
Solyc12g088790.1.1 43 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYMKFL 83
699*****************87.....8****************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010500 | Biological Process | transmitting tissue development |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048462 | Biological Process | carpel formation |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. |
| Uniprot | TISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Vercruyssen L, et al.
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
Plant Cell, 2014. 26(1): p. 210-29
[PMID:24443518] - Sparks EE,Benfey PN
HEC of a job regulating stem cells.
Dev. Cell, 2014. 28(4): p. 349-50
[PMID:24576420] - Zhu L, et al.
A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
Plant Cell, 2016. 28(4): p. 855-74
[PMID:27073231] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Boex-Fontvieille E, et al.
An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
Front Plant Sci, 2016. 7: p. 1246
[PMID:27625656] - Gaillochet C, et al.
Control of plant cell fate transitions by transcriptional and hormonal signals.
Elife, 2018.
[PMID:29058667]
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