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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc12g056790.1.1 |
Common Name | SlSRN1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
NAC |
Protein Properties |
Length: 591aa MW: 66500.3 Da PI: 4.6555 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc12g056790.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 162.4 | 1.7e-50 | 23 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
ppGfrFhPtdeelv +yLkkk+ gk++ l ++i+e+d+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nr tk+g Wk tgkd+
Solyc12g056790.1.1 23 PPGFRFHPTDEELVLYYLKKKICGKRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARANRGTKRGHWKVTGKDR 112
9*************************999.99**************96559999************************************* PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ ++++vglkktLvfykgrap ge+tdWvmhey++
Solyc12g056790.1.1 113 IIMC-NSRAVGLKKTLVFYKGRAPVGERTDWVMHEYTM 149
****.999****************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016021 | Cellular Component | integral component of membrane |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 591 aa
Download sequence Send
to blast |
MKMFELSDSD SFAVFASSKN VFPPGFRFHP TDEELVLYYL KKKICGKRIL LDAIAETDVY 60 KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT KRGHWKVTGK DRIIMCNSRA 120 VGLKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG 180 EQYGAPFREE EWADDECPSA KGFVHQDNST NHVIEAPSVD GGLEELLNPV LMEPLSVDYD 240 YAVEQLVQEE DTRSTLLYHS AKEVNFPHRS AVIAPAKESF DLTQSGTSQR QLHEALEVTS 300 APVIYEQQPH VVEEDFLEMD DLLGPEPSTQ NFDNLGPCVQ NFDEAGQSGQ NFDMPAGNFE 360 DLPFDYFDGL AEFDLYHDAS LLDDVRTTEV GQNTEPHMNN LVNGSVNPAS TTYINTFQHE 420 MMNNQPMYLN NSEQISNQLW VHDQRFNISY PSEANQLVAP PATSGVVYDS ILANHPMDAN 480 QNQLPNQDEG TPSWLTSQLW AFVDSIPTAP AIAAESPVVN SAFKRMSSFS KMRINARNMN 540 VAAAGNTATS RSSRYSKNGL FYFSFVGILC AILCVLLGTF VDILRRPISS *
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Les.2583 | 0.0 | callus| cell culture| flower| fruit| leaf |
Function -- GeneRIF ? help
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- SlSRN1 is a positive regulator of defense response against B. cinerea and Pst DC3000 but is a negative regulator for oxidative and drought stress response in tomato.[SlSRN1]
[PMID: 25010573]
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