PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g056590.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 311aa    MW: 33760.9 Da    PI: 8.3739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g056590.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.7e-21103153256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Solyc12g056590.1.1 103 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 153
                         8********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-33102161IPR001471AP2/ERF domain
SMARTSM003801.1E-37103166IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23103161IPR016177DNA-binding domain
PfamPF008471.5E-14103152IPR001471AP2/ERF domain
CDDcd000186.71E-23103162No hitNo description
PROSITE profilePS5103225.686103160IPR001471AP2/ERF domain
PRINTSPR003676.9E-12104115IPR001471AP2/ERF domain
PRINTSPR003676.9E-12126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSEMVTEFTR VVSGQDYRPD TRCYSVNSPS PAYSSSSSGS RAGLKRSRDQ QEFGTGLSSS  60
SSVKIEEATS MVAPIPAFTT TITTTTTTGE GSSEETGGDR RRKYRGVRQR PWGKWAAEIR  120
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENARLSSLPQ TQNTVTSTIS  180
NPSPLIAQPT SFLNPIQSSD TTRDYWEYSQ LLQNPGDFTD QQPSNLLEQM FVASSMAMLH  240
SNTLPLISSS SSLATSATSS TSYPLLFSSY YTPQTNQIQG TNTSSTSTTS SSSFSTTFWS  300
SSSQYPPSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24102160160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103DRRRKY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.90430.0callus| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g056590.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1644200.0Solanum lycopersicum RAP2.6-like protein gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332990.10.0ethylene response factor D.2 isoform 2
RefseqNP_001332991.10.0ethylene response factor D.2 isoform 3
TrEMBLA0A3Q7JX060.0A0A3Q7JX06_SOLLC; Uncharacterized protein
STRINGSolyc12g056590.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-25ethylene response factor 110
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]