PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 204aa MW: 22987.8 Da PI: 5.7436

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g056430.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	42	93	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ++GVr + + +Wv+eIr+p++ +kr++lg++ tae+Aa+a++ a+++l+ge Solyc12g056430.1.1 42 PVFRGVRKRD-NDKWVCEIREPTK---QKRIWLGTYLTAEMAARAHDVAALALKGE 93 579**999.8*****964...5***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-11	42	93	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.758	43	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.6E-29	43	102	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-26	43	106	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-20	43	102	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-6	44	55	IPR001471	AP2/ERF domain
CDD	cd00018	9.89E-27	44	102	No hit	No description
PRINTS	PR00367	1.5E-6	66	82	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNNSSNSCSS IPSDEGSIIL ESSNKSKKRA AGRKKFKETR HPVFRGVRKR DNDKWVCEIR 60 EPTKQKRIWL GTYLTAEMAA RAHDVAALAL KGELAKLNFA DSAWRLQVPV SKDPKELRQA 120 AARAVEAFEN VREVAPQENN IVVDCNMMVD ENNNSNSCGI EEWVANMEEE SLFSPNPCLF 180 GSHFNWDDHV ESDVEVSLWN YTI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g056430.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025884427.1	1e-149	dehydration-responsive element-binding protein 1E-like
Swissprot	Q9SGJ6	2e-50	DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBL	A0A3Q7JAC1	1e-148	A0A3Q7JAC1_SOLLC; Uncharacterized protein
STRING	Solyc12g056430.1.1	1e-149	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA263	24	183
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63030.2	5e-40	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc12g056430.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]