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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc12g049350.1.1 |
| Common Name | LOC101262599 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 294aa MW: 33922.8 Da PI: 4.7255 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g049350.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.8 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWT eEde+l ++++ G g+W+t ++ g+ R++k+c++rw +yl
Solyc12g049350.1.1 14 RGRWTIEEDERLTNYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYL 61
8*******************************99************97 PP
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| 2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T eE+ +++++ + lG++ W++Ia++++ +Rt++++k++w++
Solyc12g049350.1.1 67 RGNITSEEEAIIIKLRATLGNR-WSLIAEYLP-HRTDNEIKNYWNS 110
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MVRTPCCEKV GLKRGRWTIE EDERLTNYIQ ANGEGSWRTL PKNAGLLRCG KSCRLRWINY 60
LKSDLKRGNI TSEEEAIIIK LRATLGNRWS LIAEYLPHRT DNEIKNYWNS RLCRKVESLR 120
IPSDEELPQA VVELAKKGKQ QQIIKQRHKG KTKISGSNFV SETIVHTTSS TPNIEKETVN 180
TIPNGDNNAT EFDHNDDQML WHDDIMLMDD EDAKLDQDFI FKCLWSDQGE SFEIIENNNN 240
NNNNNEILNV DNHGTLDGWD WEYLDEMLNN EIENNNVSNI DPMNSDLVAW LLS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in roots. Expressed predominantly in the root, in the vascular tissue of the hypocotyl-root transition zone and, at low levels, at the region of apical meristem and the apex of cotyledons. {ECO:0000269|PubMed:17419845}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in stems and flower buds (PubMed:9839469). Expressed in seedlings, roots, cotyledons and apical meristems (PubMed:17419845). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:9839469}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Pandey A, et al.
Co-expression of Arabidopsis transcription factor, AtMYB12, and soybean isoflavone synthase, GmIFS1, genes in tobacco leads to enhanced biosynthesis of isoflavones and flavonols resulting in osteoprotective activity.
Plant Biotechnol. J., 2014. 12(1): p. 69-80
[PMID:24102754] - Schenke D,Cai D,Scheel D
Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
Plant Cell Environ., 2014. 37(7): p. 1716-21
[PMID:24450952] - Pandey A, et al.
AtMYB12 expression in tomato leads to large scale differential modulation in transcriptome and flavonoid content in leaf and fruit tissues.
Sci Rep, 2015. 5: p. 12412
[PMID:26206248] - Lotkowska ME, et al.
The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
Plant Physiol., 2015. 169(3): p. 1862-80
[PMID:26378103] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Li Y, et al.
Development of Marker-Free Transgenic Potato Tubers Enriched in Caffeoylquinic Acids and Flavonols.
J. Agric. Food Chem., 2016. 64(14): p. 2932-40
[PMID:27019017] - Zhou Z,Schenke D,Miao Y,Cai D
Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
Plant Cell Environ., 2017. 40(3): p. 453-458
[PMID:28032363] - Wang N, et al.
MYB12 and MYB22 play essential roles in proanthocyanidin and flavonol synthesis in red-fleshed apple (Malus sieversii f. niedzwetzkyana).
Plant J., 2017. 90(2): p. 276-292
[PMID:28107780] - Stracke R,Turgut-Kara N,Weisshaar B
The AtMYB12 activation domain maps to a short C-terminal region of the transcription factor.
Z. Naturforsch., C, J. Biosci., 2017. 72(7-8): p. 251-257
[PMID:28284041] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Hidalgo D, et al.
Tailoring tobacco hairy root metabolism for the production of stilbenes.
Sci Rep, 2017. 7(1): p. 17976
[PMID:29269790]
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