PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g044410.1.1
Common NameLOC101246802
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92347.8 Da    PI: 6.5931
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g044410.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191674357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Solyc12g044410.1.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74
                        5679*****************************************************97 PP
2START175.33.7e-551603672204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + ++  g+
  Solyc12g044410.1.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGT 249
                         789*******************************************************.8888888888****************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+    +g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s v++v+h++l+++++
  Solyc12g044410.1.1 250 IELLYMQLYAPTTLAPpRDFWLIRYTTVTDDGSFVVCERSLGNTQNGPSmpqVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMNLEAWSV 340
                         ************************************************9998899************************************ PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+++ ++kt++a+l++++
  Solyc12g044410.1.1 341 PEVLRPLYESSAVLAQKTTMAALRQLR 367
                         ***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7421175IPR001356Homeobox domain
SuperFamilySSF466893.51E-171377IPR009057Homeodomain-like
SMARTSM003892.3E-161379IPR001356Homeobox domain
CDDcd000868.52E-171676No hitNo description
PfamPF000461.1E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-181874IPR009057Homeodomain-like
CDDcd146861.10E-568107No hitNo description
PROSITE profilePS5084826.76150365IPR002913START domain
CDDcd088752.32E-75154369No hitNo description
Gene3DG3DSA:3.30.530.201.9E-24159365IPR023393START-like domain
SMARTSM002341.6E-40159369IPR002913START domain
SuperFamilySSF559612.75E-36159367No hitNo description
PfamPF018521.6E-52160367IPR002913START domain
PfamPF086702.8E-50694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LIRYTTVTDD GSFVVCERSL GNTQNGPSMP  300
QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM  360
AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN EALNGFSSEG WSMLDNDGMD  420
DVTILVNSSP DKLMGLNLSF SDGFTSLSNA VLCAKASMLL QSVTPAILLR FLREHRSEWV  480
DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVCHSPEDV  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDTP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSKVA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSNFGSL GGLRLPLGTP EAHTLARWIC QSYRRFLGVE LPKLSSEGSE  720
SLLDSLWHHS DAIICCSAKA LPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE KAVAWKVLNE EDTAHCIGFM FVNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.107060.0cell culture| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g044410.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252354.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A3Q7JAS20.0A0A3Q7JAS2_SOLLC; Uncharacterized protein
STRINGSolyc12g044410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]