PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 144aa MW: 16152.4 Da PI: 9.7698

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g044390.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.3	4.5e-19	28	78	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr p++ + r++lg++ t+e+Aa+a++ a+++++g Solyc12g044390.1.1 28 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 78 68***998.******843...6*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.2E-14	28	78	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.2E-32	29	87	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.248	29	86	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-36	29	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-22	29	87	IPR016177	DNA-binding domain
PRINTS	PR00367	2.5E-10	30	41	IPR001471	AP2/ERF domain
CDD	cd00018	1.84E-31	30	86	No hit	No description
PRINTS	PR00367	2.5E-10	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MAELVQSSSI SVSKTEEKEK RTRDETYPVY RGVRMRSWGK WVSEIRQPRK KSRIWLGTYP 60 TPEMAARAHD VAALSIKGNS AILNFPQLVE SLPRPASISP RDVQAAAAMD ELNSSVSSTL 120 RHSESMETED QLGQIIEIYK VKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	30	87	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g044390.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252501.1	1e-101	dehydration-responsive element-binding protein 3
Swissprot	Q9LYD3	5e-49	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A3Q7JW80	7e-91	A0A3Q7JW80_SOLLC; Uncharacterized protein
STRING	Solyc12g044390.1.1	1e-101	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-48	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc12g044390.1.1
Entrez Gene	101256853

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]