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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc12g040230.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 267aa MW: 29503.1 Da PI: 8.1716 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc12g040230.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 66 | 84 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS
zf-CCCH 6 CrffartGtCkyGdrCkFaH 25
C+ffar G C G++C+F H
Solyc12g040230.1.1 66 CKFFAR-GRCTKGNSCRFLH 84
******.************* PP
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Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MSFSPTHFFC VCWSILSPTL LDTLPINSFS CKEAIGDLKK TSQRLDVLKT RKRSAADLED 60 RFATGCKFFA RGRCTKGNSC RFLHTKQPVT SHETSKIPHD KGLEEKSLLD GSSQSGENLR 120 MRGGEDSLHP NSHLGYTSKS PAFPSSITGY SWKNHLSQDT RIYQSDVGDG SFPVLINHMQ 180 ANADPASTGS NKVQISGHSD MLPEKDLPRH GTTVAHQENM NTSSKEDKHL ESEIDVDNKS 240 VNTKSVVLKN FHVALVEFVK ELLRPT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC254130 | 1e-157 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone slm-19p6 map 12, complete sequence |
GenBank | AC254257 | 1e-157 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone slm-12m6 map 12, complete sequence |
GenBank | AC254304 | 1e-157 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone sle-47p9 map 12, complete sequence |