PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g035520.1.1 | ||||||||
Common Name | LOC101055567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CAMTA | ||||||||
Protein Properties | Length: 974aa MW: 108982 Da PI: 6.6755 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.6 | 9.5e-53 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 ++e + rwl++ e++ iL+n++ +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n Solyc12g035520.1.1 12 VQEgRFRWLRPAEVLFILQNHDDRQLAHQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKN 102 667799************************************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhyle 116 ++fqrr+yw+L+ ++e+ivlvhy++ Solyc12g035520.1.1 103 SNFQRRSYWILDPAYEHIVLVHYRD 127 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.458 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.8E-72 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.1E-47 | 16 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-10 | 403 | 492 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 9.3E-11 | 407 | 490 | IPR002909 | IPT domain |
CDD | cd00102 | 3.13E-8 | 407 | 491 | No hit | No description |
SuperFamily | SSF81296 | 1.4E-19 | 407 | 491 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 8.1E-13 | 604 | 700 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.594 | 606 | 698 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.55E-13 | 610 | 701 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.89E-12 | 627 | 698 | No hit | No description |
Pfam | PF12796 | 3.3E-6 | 627 | 699 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.885 | 639 | 671 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 82 | 756 | 778 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.291 | 757 | 786 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.96E-6 | 759 | 863 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 6.3 | 815 | 837 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.401 | 816 | 845 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 818 | 836 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 838 | 860 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.883 | 840 | 864 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-5 | 841 | 860 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI 120 VLVHYRDITE GRQIAAFMSQ SSPISSTFPL SPSLYSTQHP GFNVPGTESY QQYQDESRPG 180 YGEICSDAVI HSNGMNVSDI TRMMEGVSNS PKVEISQALR RLEEQLNLND DSSSDIYSLY 240 SEIENSNDAE NVVHDKSSLV QIQDNSNNFL FLPHSGESSE SRDQLLNLDN SMWKEMLDHC 300 RSSPASQPQA KCFEKLDENG MLQTSSGSEP IEAIKSDRWP IIGGKEALKC SVTNLKQVDD 360 FKYIGCAQIN VFGSYPDQCT TIFDQDQIGI SSETNMSLTI VQKQKFTIHD ISPDWGYASD 420 ATKVVIIGSY LCNPSEYTWT CMFGDTEVPV QIIKDGAIRC QAPPHLPGKV ALCVTTGNRT 480 PCSEVREFEY RAKFDDRGQN VVPEVGGASK SSEELLLLVR FVQMLLSDSS VQIGDGSELS 540 NDILEKSKAS EDSWSQVIES LLFGTSTSTV TIDWLLQELL KNKLQQWLSS KLQVKNNEMV 600 YSLSRKDQGI VHMIAGLGFE WALHPVLNAG VSANFRDIRG WTALHWAARF GREKMVASLI 660 ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLTSL TLEECDVSKG 720 TADIEAEQTI SNITTTSPVT HEDQLSLKDT LDAVRNAAQA AARIQSAFRA HSFRKRRLRE 780 AAHVATTCRD EYCILSNDVL GLSAASKLAF RNVRDYNSAA LSIQRKYRGW KGRKDFLVFR 840 QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEDE PIEESENEDI 900 LKLFRKQKVD AAINEAVSRV LSMVDSPEAR QQYRRILEKY RQAKAEVAGA KSDAISTAHS 960 DISNVENNDV YHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10125 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g035520.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN566047 | 0.0 | Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010314155.1 | 0.0 | calmodulin-binding transcription factor SR2 isoform X4 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | H8ZRY2 | 0.0 | H8ZRY2_SOLLC; Calmodulin-binding transcription factor SR2 | ||||
STRING | Solyc12g035520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3932 | 20 | 37 |
Representative plant | OGRP562 | 15 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-180 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g035520.1.1 |
Entrez Gene | 101055567 |
Publications ? help Back to Top | |||
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