PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g035520.1.1

Common Name

LOC101055567

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 974aa MW: 108982 Da PI: 6.6755

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g035520.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.6	9.5e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 ++e + rwl++ e++ iL+n++ +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n Solyc12g035520.1.1 12 VQEgRFRWLRPAEVLFILQNHDDRQLAHQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKN 102 667799*********************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhyle 116 ++fqrr+yw+L+ ++e+ivlvhy++ Solyc12g035520.1.1 103 SNFQRRSYWILDPAYEHIVLVHYRD 127 *********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.458	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.8E-72	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-47	16	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.3E-10	403	492	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	9.3E-11	407	490	IPR002909	IPT domain
CDD	cd00102	3.13E-8	407	491	No hit	No description
SuperFamily	SSF81296	1.4E-19	407	491	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	8.1E-13	604	700	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	12.594	606	698	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.55E-13	610	701	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.89E-12	627	698	No hit	No description
Pfam	PF12796	3.3E-6	627	699	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.885	639	671	IPR002110	Ankyrin repeat
SMART	SM00015	82	756	778	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.291	757	786	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.96E-6	759	863	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	6.3	815	837	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.401	816	845	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	818	836	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	838	860	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.883	840	864	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-5	841	860	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0001077	Molecular Function	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence Send to blast
MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI 120 VLVHYRDITE GRQIAAFMSQ SSPISSTFPL SPSLYSTQHP GFNVPGTESY QQYQDESRPG 180 YGEICSDAVI HSNGMNVSDI TRMMEGVSNS PKVEISQALR RLEEQLNLND DSSSDIYSLY 240 SEIENSNDAE NVVHDKSSLV QIQDNSNNFL FLPHSGESSE SRDQLLNLDN SMWKEMLDHC 300 RSSPASQPQA KCFEKLDENG MLQTSSGSEP IEAIKSDRWP IIGGKEALKC SVTNLKQVDD 360 FKYIGCAQIN VFGSYPDQCT TIFDQDQIGI SSETNMSLTI VQKQKFTIHD ISPDWGYASD 420 ATKVVIIGSY LCNPSEYTWT CMFGDTEVPV QIIKDGAIRC QAPPHLPGKV ALCVTTGNRT 480 PCSEVREFEY RAKFDDRGQN VVPEVGGASK SSEELLLLVR FVQMLLSDSS VQIGDGSELS 540 NDILEKSKAS EDSWSQVIES LLFGTSTSTV TIDWLLQELL KNKLQQWLSS KLQVKNNEMV 600 YSLSRKDQGI VHMIAGLGFE WALHPVLNAG VSANFRDIRG WTALHWAARF GREKMVASLI 660 ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLTSL TLEECDVSKG 720 TADIEAEQTI SNITTTSPVT HEDQLSLKDT LDAVRNAAQA AARIQSAFRA HSFRKRRLRE 780 AAHVATTCRD EYCILSNDVL GLSAASKLAF RNVRDYNSAA LSIQRKYRGW KGRKDFLVFR 840 QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEDE PIEESENEDI 900 LKLFRKQKVD AAINEAVSRV LSMVDSPEAR QQYRRILEKY RQAKAEVAGA KSDAISTAHS 960 DISNVENNDV YHS*

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence Send to blast

MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI  120
VLVHYRDITE GRQIAAFMSQ SSPISSTFPL SPSLYSTQHP GFNVPGTESY QQYQDESRPG  180
YGEICSDAVI HSNGMNVSDI TRMMEGVSNS PKVEISQALR RLEEQLNLND DSSSDIYSLY  240
SEIENSNDAE NVVHDKSSLV QIQDNSNNFL FLPHSGESSE SRDQLLNLDN SMWKEMLDHC  300
RSSPASQPQA KCFEKLDENG MLQTSSGSEP IEAIKSDRWP IIGGKEALKC SVTNLKQVDD  360
FKYIGCAQIN VFGSYPDQCT TIFDQDQIGI SSETNMSLTI VQKQKFTIHD ISPDWGYASD  420
ATKVVIIGSY LCNPSEYTWT CMFGDTEVPV QIIKDGAIRC QAPPHLPGKV ALCVTTGNRT  480
PCSEVREFEY RAKFDDRGQN VVPEVGGASK SSEELLLLVR FVQMLLSDSS VQIGDGSELS  540
NDILEKSKAS EDSWSQVIES LLFGTSTSTV TIDWLLQELL KNKLQQWLSS KLQVKNNEMV  600
YSLSRKDQGI VHMIAGLGFE WALHPVLNAG VSANFRDIRG WTALHWAARF GREKMVASLI  660
ASGAFAGAVT DPSSQDPFGK TAASIASSCG HKGVAGYLSE VALTSHLTSL TLEECDVSKG  720
TADIEAEQTI SNITTTSPVT HEDQLSLKDT LDAVRNAAQA AARIQSAFRA HSFRKRRLRE  780
AAHVATTCRD EYCILSNDVL GLSAASKLAF RNVRDYNSAA LSIQRKYRGW KGRKDFLVFR  840
QKVVKIQAHV RGYQVRKEYK VCWAVGILEK VVLRWRRRGV GLRGFRLEDE PIEESENEDI  900
LKLFRKQKVD AAINEAVSRV LSMVDSPEAR QQYRRILEKY RQAKAEVAGA KSDAISTAHS  960
DISNVENNDV YHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10125	0.0	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g035520.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566047	0.0	Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010314155.1	0.0	calmodulin-binding transcription factor SR2 isoform X4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	H8ZRY2	0.0	H8ZRY2_SOLLC; Calmodulin-binding transcription factor SR2
STRING	Solyc12g035520.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-180	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Solyc12g035520.1.1
Entrez Gene	101055567

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Yang T,Peng H,Whitaker BD,Conway WS Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening. BMC Plant Biol., 2012. 12: p. 19 [PMID:22330838] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]