PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g017410.1.1
Common NameLOC101255963
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 498aa    MW: 54248.3 Da    PI: 8.2243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g017410.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-11137161226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C ++++t tCk+Gd+CkF H+
  Solyc12g017410.1.1 137 GEKDCAHYMQTRTCKFGDSCKFDHP 161
                         7889********************8 PP
2zf-CCCH34.92.6e-11186212127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f +t  Ck+GdrCkF+H++
  Solyc12g017410.1.1 186 PGEPDCPYFVKTKKCKFGDRCKFNHPK 212
                         5789*********************96 PP
3zf-CCCH38.12.6e-12239261527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C f+++tGtCk+G++CkF+H++
  Solyc12g017410.1.1 239 QCTFYMKTGTCKFGATCKFHHPR 261
                         6********************96 PP
4zf-CCCH375.6e-12311337127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tG CkyG++C+++H++
  Solyc12g017410.1.1 311 PGEVDCPFYLKTGSCKYGGTCRYSHPE 337
                         57899********************96 PP
5zf-CCCH43.64.7e-14390415126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f+++tG+CkyG++CkF+H+
  Solyc12g017410.1.1 390 PGQVECDFYMKTGECKYGEKCKFHHP 415
                         5789*********************9 PP
6zf-CCCH437.6e-14447470427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +lC+++++tG CkyG++CkF H+p
  Solyc12g017410.1.1 447 VLCPYYMKTGMCKYGASCKFDHPP 470
                         79********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742135163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5136162IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4141160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497185213IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6185212IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9187212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6190214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4191211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216234262IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5234261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6237262IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10238261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5240261IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835310338IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4316337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666389417IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8389416IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11391415IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6392417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5395415IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8443470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183443471IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10447470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6447470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6448468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MANQLYGYNP SGTAGIVAAN TRSMEDYLSK DKTLLSSSTY FGSTAYSSYQ TDTYSPTASR  60
IPGYGPPGVD VTQPAAVTDS YFSSLKRSSS NALYHQALLG AHNTIGQAEA WCSANPLAKR  120
PRFESASNLS IYPQRPGEKD CAHYMQTRTC KFGDSCKFDH PIWVPEGGIP NWKEVPVSTE  180
SLPERPGEPD CPYFVKTKKC KFGDRCKFNH PKDNTAHLFQ GSVQNPGVSD LPERPSEQQC  240
TFYMKTGTCK FGATCKFHHP RDIQLPSPTQ KNGSVGKLGS ANYEMTEDVN LVKPLSVAAL  300
LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYSHPERNG VGIGPALVAS PATHWNIGMV  360
NPAASLFQNF DPRLTHTMLG VLPPVYPQRP GQVECDFYMK TGECKYGEKC KFHHPLDRSA  420
SAVSVKDVQQ PNVKLTLAGL PRREGAVLCP YYMKTGMCKY GASCKFDHPP PGEVLGMTTS  480
QGASLSVDGV DNVDVNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.77720.0callus| flower| fruit| leaf| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g017410.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313972.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3Q7J5Y80.0A0A3Q7J5Y8_SOLLC; Uncharacterized protein
STRINGSolyc12g017410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]