PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g017300.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17740.1 Da    PI: 5.1062
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g017300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.9e-1221481340
                        HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                        + +R   ++KKAeELS+LCd+e+a+iif
  Solyc12g017300.1.1 21 LDRREISLFKKAEELSILCDVEAAIIIF 48
                        5567779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.811148IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-141393IPR002100Transcription factor, MADS-box
PfamPF003193.4E-111551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MATKRLRDSR NYSENVRNSI LDRREISLFK KAEELSILCD VEAAIIIFRP GKIQPIAWKS  60
ASLAQDVLTR YLSFLEFKRL DKLVTHEDYL QKLVDKKEEQ ITKLQKMNEM EESFNDPWFI  120
QSIATLGDGS GIESTPKEGN GVNVEYDGHS KDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g017300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252141.19e-88MADS-box transcription factor PHERES 2-like
TrEMBLK4DD641e-109K4DD64_SOLLC; Uncharacterized protein
STRINGSolyc12g017300.1.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-14AGAMOUS-like 96
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]