PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc12g016180.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25207.8 Da PI: 6.574 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 4.9e-13 | 21 | 48 | 13 | 40 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40 + +R ++KKAeELS+LCd+eva++if Solyc12g016180.1.1 21 LDRRERSLFKKAEELSILCDVEVAIVIF 48 567899*********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-5 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.33 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-15 | 10 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-12 | 15 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MAIKRLRNTR NYSENVRNSI LDRRERSLFK KAEELSILCD VEVAIVIFRP GKIQPITWKS 60 ASLDQDVLTR YLGFIEFKRL NKLVTHEYYL QKKIDKKEEQ ISKLEKMNEA KEMEILFNQL 120 VEGKSINELD AREMKGLLKV FAAKMAKLDE RKKELNQTPN PPSNKENITL SGSPMEESFN 180 GPWFIQTIAT LGDGSDIEFS PKEGNGVNVE DDGHSKDLD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc12g016180.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019066913.1 | 1e-157 | agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A3Q7J529 | 1e-159 | A0A3Q7J529_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g016180.1.1 | 1e-159 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65300.1 | 2e-14 | AGAMOUS-like 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc12g016180.1.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|