PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g016180.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 220aa    MW: 25207.8 Da    PI: 6.574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g016180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF404.9e-1321481340
                        HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                        + +R   ++KKAeELS+LCd+eva++if
  Solyc12g016180.1.1 21 LDRRERSLFKKAEELSILCDVEVAIVIF 48
                        567899*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-5160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.33148IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-151095IPR002100Transcription factor, MADS-box
PfamPF003193.6E-121551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAIKRLRNTR NYSENVRNSI LDRRERSLFK KAEELSILCD VEVAIVIFRP GKIQPITWKS  60
ASLDQDVLTR YLGFIEFKRL NKLVTHEYYL QKKIDKKEEQ ISKLEKMNEA KEMEILFNQL  120
VEGKSINELD AREMKGLLKV FAAKMAKLDE RKKELNQTPN PPSNKENITL SGSPMEESFN  180
GPWFIQTIAT LGDGSDIEFS PKEGNGVNVE DDGHSKDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g016180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019066913.11e-157agamous-like MADS-box protein AGL90
TrEMBLA0A3Q7J5291e-159A0A3Q7J529_SOLLC; Uncharacterized protein
STRINGSolyc12g016180.1.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-14AGAMOUS-like 38
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]