PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 354aa MW: 40581.5 Da PI: 8.6766

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g013660.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.5e-17	122	171	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr p++ r+r +lg+f +aeeAa a++ + +l+g Solyc12g013660.1.1 122 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFESAEEAAFAYDVEAFRLRG 171 8*****9.******954...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.49E-33	121	181	No hit	No description
Pfam	PF00847	1.6E-10	122	171	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-38	122	185	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.6E-31	122	180	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.604	122	179	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.34E-22	122	180	IPR016177	DNA-binding domain
PRINTS	PR00367	3.2E-10	123	134	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-10	145	161	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MKNIESIDNL QSIMSMYRPL KKLKISSSSQ HNSLRSSGDG VEPVAQRIRA RGYEPQFRFP 60 FALDDPPLSS CHINWQSLTQ NQTMISFAPQ SWFNQCRIID NGTRTTSMMN VYGTVSSPAS 120 KRYRGVRQRH WGKWVAEIRL PRKRTRLWLG TFESAEEAAF AYDVEAFRLR GTDARLNFPH 180 LFLGDLAPFD NNINVTNSAS PSTTSFAKNP FQIQHNKRFI RQCRNKKIVP SAVEQSTSVF 240 DKEIMMQDKA AYNKPLWYDP SQDSVHNESL VHETSQTMMF DGSDFYEPTP KYTNNIQQEN 300 SDMWKNVLQP TPFGNYSICT DDNLQQQKQQ CDFTITDPGF GDNVFDFSSK LLG*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MKNIESIDNL QSIMSMYRPL KKLKISSSSQ HNSLRSSGDG VEPVAQRIRA RGYEPQFRFP  60
FALDDPPLSS CHINWQSLTQ NQTMISFAPQ SWFNQCRIID NGTRTTSMMN VYGTVSSPAS  120
KRYRGVRQRH WGKWVAEIRL PRKRTRLWLG TFESAEEAAF AYDVEAFRLR GTDARLNFPH  180
LFLGDLAPFD NNINVTNSAS PSTTSFAKNP FQIQHNKRFI RQCRNKKIVP SAVEQSTSVF  240
DKEIMMQDKA AYNKPLWYDP SQDSVHNESL VHETSQTMMF DGSDFYEPTP KYTNNIQQEN  300
SDMWKNVLQP TPFGNYSICT DDNLQQQKQQ CDFTITDPGF GDNVFDFSSK LLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-20	121	179	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-20	121	179	4	63	ATERF1
3gcc_A	2e-20	121	179	4	63	ATERF1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g013660.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM087200	6e-22	Solanum lycopersicum complete chloroplast genome, cultivar IPA-6
GenBank	DQ347959	6e-22	Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome
GenBank	JF414416	6e-22	Solanum lycopersicum cultivar H8878-1 LCV resistance marker genomic sequence
GenBank	KC147634	6e-22	Solanum lycopersicum APRR2-like protein mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001355177.1	0.0	ethylene response factor H.13
TrEMBL	M1B8H7	0.0	M1B8H7_SOLTU; Uncharacterized protein
STRING	Solyc12g013660.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36060.1	4e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc12g013660.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]