PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g013620.1.1 | ||||||||
Common Name | JA2, LEJA2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 39475.2 Da PI: 8.6869 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Solyc12g013620.1.1 14 LPPGFRFYPTDEELLVQYLCKKVAGHDFPL-QIIGEIDLYKFDPWVLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKV 103 79****************************.89***************988899************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Solyc12g013620.1.1 104 ITS-QGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 139 **9.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-65 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.431 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FPLQIIGEID LYKFDPWVLP 60 SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSQGRK VGIKKALVFY 120 VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE 180 YSHGSSTSSS SQFDDMLESL PEMDDRFSNL PRLNSLKAEK FNLDRLDSAN FDWAILAGLK 240 PMPELGPANQ APGVQGQAQG HVNNHIHSDN NNMNFLNDVY AHPPNFRGNT KVESINLDEE 300 VESGKRNQRI DQSSYFQQSL NGFSQAYTNN VDQFGIQCPN QTLNLGFKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23 | 0.0 | callus| flower| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g013620.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF011555 | 0.0 | Lycopersicon esculentum jasmonic acid 2 (LEJA2) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233972.1 | 0.0 | jasmonic acid 2 | ||||
Swissprot | Q9SQL0 | 0.0 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
TrEMBL | A0A0V0IBL7 | 0.0 | A0A0V0IBL7_SOLCH; Putative NAC domain-containing protein 72-like | ||||
STRING | Solyc12g013620.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-124 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g013620.1.1 |
Entrez Gene | 543526 |
Publications ? help Back to Top | |||
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