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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc12g010490.1.1 |
Common Name | LOC101250281 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
AP2 |
Protein Properties |
Length: 365aa MW: 41139.7 Da PI: 7.7354 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc12g010490.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 33.1 | 1.4e-10 | 46 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n ++k+ + g ++ + Aa a++ a++k++g
Solyc12g010490.1.1 46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEGTAAHAYDLAALKYWG 102
57*******************99998898888888*****66*************98 PP
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2 | AP2 | 51.2 | 3.1e-16 | 145 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Solyc12g010490.1.1 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196
89****99**********99966...3.6*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MGKLSQQNQI RNNLSTNNGN NIIGSIVKVK RTRKTVPRDS PPQRSSIYRG VTRHRWTGRY 60 EAHLWDKNCW NESQNKKGRQ GAYDDEGTAA HAYDLAALKY WGSETILNFP VSTYEKEIIE 120 MENQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ 180 EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLKPNKNNQS NPNVETNMIP TPNHSIGSTT 240 IVTTTSSSTA LVYPDSQLTT NTSISDVSIS QINRPSSATS ALGLLLQSTK FKEMMEMTLA 300 AECPPAPIEL PDPDPPQSSN FPEDIKTYFD TQEFGNFGHE QGEDLVFNEI NSLMQPHLQF 360 DYDA*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]
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