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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc12g010170.1.1 |
| Common Name | LOC101244057 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
bHLH |
| Protein Properties |
Length: 388aa MW: 40051.2 Da PI: 6.5719 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g010170.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.6 | 8e-12 | 197 | 242 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq
Solyc12g010170.1.1 197 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 242
99***********************8.....6******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0048767 | Biological Process | root hair elongation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MQAMNSFQST GENGASSGEH MSHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN 60
FDDHQSTLLA SKLRQHQING GTSAAAAAKA LMLQQQLLLS RGIAGNGGSG INGDQNDDGL 120
NSGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQAQSFGAP AASLSMNQTP AASGSAGGAQ 180
PKQQKVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP NANKTDKASM LDEIIDYVRF 240
LQLQVKVLSM SRLGGAAAVA PLVADRSSEG GGDCVQGNVG RGGSNGTTSS ANNDSSMTMT 300
EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTC HSMKPNNPLL LAGGSAINGV 360
GETGGGPSSP TLSASTVQSA TMGNGGT*
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| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang J, et al.
Sperm cells are passive cargo of the pollen tube in plant fertilization.
Nat Plants, 2017. 3: p. 17079
[PMID:28585562]
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