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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc12g009580.1.1 |
| Common Name | LOC101258923 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
YABBY |
| Protein Properties |
Length: 192aa MW: 21795.6 Da PI: 8.3868 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc12g009580.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 185.9 | 2e-57 | 11 | 157 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97
e++Cy+ CnfCn +l+vsvP + l+ +vtvrCGhCt+l svn+a a ++ + ++hl++++ + + + k + as+s++
Solyc12g009580.1.1 11 FEKLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHTNSWQNHLHHQVGNYTNSPHD---------QYKVDFASSSIT 92
589****************************************************977665543222221.........122222222222 PP
YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ n++ e +v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl
Solyc12g009580.1.1 93 N-----NSTLE---ERNVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 157
2.....22222...23589****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MSSSYIDSTN FEKLCYIPCN FCNIVLVVSV PCSNLLDIVT VRCGHCTNLW SVNMAAAFHT 60
NSWQNHLHHQ VGNYTNSPHD QYKVDFASSS ITNNSTLEER NVNRPPEKRQ RGPSAYNQFI 120
KEEIQRIKAN NPDITHREAF STAAKNWAHF PHIQFGLMLE TDNQAKLGAS ENKEKLIMHR 180
AALPKIKTFT F*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209588 | 3e-68 | Solanum lycopersicum DNA sequence from clone LE_HBa-146I19 on chromosome 12, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
Plant Cell, 2015. 27(12): p. 3321-35
[PMID:26589551]
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