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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g009240.1.1 | ||||||||
Common Name | LOC101253257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27838.7 Da PI: 4.322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g+Wv+eIr p++ r r++lg+++t+e+Aaka +aa +l+g Solyc12g009240.1.1 18 SLYRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAAKAFDAALFCLRG 68 57*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-20 | 18 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 19 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 19 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 19 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 19 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.42E-28 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 8.8E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVKPNSKDTE FSQSSSSSLY RGVRKRKWGK WVSEIRLPNS RERIWLGSYD TPEKAAKAFD 60 AALFCLRGKG ANFNFPENPP EIRNGRTMTP SEIQSAAAQF ANNTEPELIR VGPRENSDLS 120 SSSSEIFRAE SPSVSVSDRV ESEKTEITLG NDFIDVYRVE SRVESEKTEM SLDNGFVDMF 180 SSLGTVNDMS DFGIFPGFDD LSGEFFIPPP SSPQPSPLQM PNLESLEEEN YLNYDGFQSQ 240 GTSFLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-15 | 14 | 77 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.13463 | 0.0 | callus| flower| fruit| leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g009240.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251702.1 | 0.0 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A3Q7J3S7 | 1e-179 | A0A3Q7J3S7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g009240.1.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-55 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g009240.1.1 |
Entrez Gene | 101253257 |
Publications ? help Back to Top | |||
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